Analysis of interatomic Contacts of Structural Units in PDB entry:
6CPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CPH entry

There are 2 chains in PDB entry 6CPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 LEU 2SER 212
E
 PRO 2ASP 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6CPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
91 95Right-handed 310
Helix 2
AA2
D
194 199Right-handed alpha
Helix 3
AA3
E
95 99Right-handed 310
Helix 4
AA4
E
147 155Right-handed alpha
Helix 5
AA5
E
214 218Right-handed alpha
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There are 11 sheets in PDB entry 6CPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
19 24anti-parallel
Strand 3
D
82 87anti-parallel
Strand 4
D
72 75anti-parallel
Strand 5
D
66 69anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
116 121parallel
Strand 3
D
96 103anti-parallel
Strand 4
D
33 44anti-parallel
Strand 5
D
51 56anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
116 121parallel
Strand 3
D
96 103anti-parallel
Strand 4
D
110 112anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 135first strand
Strand 2
D
143 148anti-parallel
Strand 3
D
179 188anti-parallel
Strand 4
D
164 166anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 135first strand
Strand 2
D
143 148anti-parallel
Strand 3
D
179 188anti-parallel
Strand 4
D
170 174anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
87 91anti-parallel
Strand 4
E
76 79anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
125 130parallel
Strand 3
E
100 107anti-parallel
Strand 4
E
31 44anti-parallel
Strand 5
E
50 57anti-parallel
Strand 6
E
60 68anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
125 130parallel
Strand 3
E
100 107anti-parallel
Strand 4
E
120 121anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 144first strand
Strand 2
E
156 166anti-parallel
Strand 3
E
204 213anti-parallel
Strand 4
E
186 188anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 144first strand
Strand 2
E
156 166anti-parallel
Strand 3
E
204 213anti-parallel
Strand 4
E
193 194anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
180 182first strand
Strand 2
E
172 177anti-parallel
Strand 3
E
223 230anti-parallel
Strand 4
E
249 256anti-parallel
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