Analysis of interatomic Contacts of Structural Units in PDB entry:
6CPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CPM entry

There are 4 chains in PDB entry 6CPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 277	GLY 618
D	GLY 280	GLY 618
E	ALA -1	LEU 77
F	ALA -1	ARG 76

There are 29 helices in PDB entry 6CPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	297	309	Right-handed alpha
Helix 2	AA2	C	310	319	Right-handed alpha
Helix 3	AA3	C	322	326	Right-handed 310
Helix 4	AA4	C	336	350	Right-handed alpha
Helix 5	AA5	C	359	370	Right-handed alpha
Helix 6	AA6	C	380	396	Right-handed alpha
Helix 7	AA7	C	414	430	Right-handed alpha
Helix 8	AA8	C	432	439	Right-handed alpha
Helix 9	AA9	C	478	486	Right-handed alpha
Helix 10	AB1	C	531	535	Right-handed 310
Helix 11	AB2	C	597	601	Right-handed 310
Helix 12	AB3	D	297	309	Right-handed alpha
Helix 13	AB4	D	310	319	Right-handed alpha
Helix 14	AB5	D	322	326	Right-handed 310
Helix 15	AB6	D	336	350	Right-handed alpha
Helix 16	AB7	D	359	370	Right-handed alpha
Helix 17	AB8	D	371	374	Right-handed 310
Helix 18	AB9	D	380	396	Right-handed alpha
Helix 19	AC1	D	414	430	Right-handed alpha
Helix 20	AC2	D	432	439	Right-handed alpha
Helix 21	AC3	D	478	486	Right-handed alpha
Helix 22	AC4	D	531	535	Right-handed 310
Helix 23	AC5	D	597	601	Right-handed 310
Helix 24	AC6	E	22	35	Right-handed alpha
Helix 25	AC7	E	37	39	Right-handed 310
Helix 26	AC8	E	60	64	Right-handed 310
Helix 27	AC9	F	22	35	Right-handed alpha
Helix 28	AD1	F	37	39	Right-handed 310
Helix 29	AD2	F	60	64	Right-handed 310

There are 14 sheets in PDB entry 6CPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	356	357	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	461	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	509	516	anti-parallel
Strand 4	C	489	490	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	466	first strand
Strand 2	C	520	525	parallel
Strand 3	C	606	613	anti-parallel
Strand 4	C	554	565	anti-parallel
Strand 5	C	549	551	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	466	first strand
Strand 2	C	520	525	parallel
Strand 3	C	606	613	anti-parallel
Strand 4	C	554	565	anti-parallel
Strand 5	C	572	578	anti-parallel
Strand 6	C	585	589	anti-parallel
Strand 7	C	592	595	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	477	first strand
Strand 2	C	541	543	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	499	first strand
Strand 2	C	504	506	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	291	first strand
Strand 2	D	356	357	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	461	first strand
Strand 2	D	440	447	anti-parallel
Strand 3	D	509	516	anti-parallel
Strand 4	D	489	490	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	466	first strand
Strand 2	D	520	525	parallel
Strand 3	D	606	613	anti-parallel
Strand 4	D	554	565	anti-parallel
Strand 5	D	549	551	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	466	first strand
Strand 2	D	520	525	parallel
Strand 3	D	606	613	anti-parallel
Strand 4	D	554	565	anti-parallel
Strand 5	D	572	578	anti-parallel
Strand 6	D	585	589	anti-parallel
Strand 7	D	592	595	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	477	first strand
Strand 2	D	541	543	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	499	first strand
Strand 2	D	504	506	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	17	first strand
Strand 2	E	1	6	anti-parallel
Strand 3	E	70	75	parallel
Strand 4	E	41	47	anti-parallel
Strand 5	E	50	53	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	17	first strand
Strand 2	F	1	6	anti-parallel
Strand 3	F	70	75	parallel
Strand 4	F	41	47	anti-parallel
Strand 5	F	50	53	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CPM