Analysis of interatomic Contacts of Structural Units in PDB entry:
6CPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CPY entry

There are 2 chains in PDB entry 6CPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 185PRO 492
B
 PHE 209PRO 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6CPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
217 225Right-handed alpha
Helix 2
AA2
A
260 264Right-handed 310
Helix 3
AA3
A
265 281Right-handed alpha
Helix 4
AA4
A
313 320Right-handed alpha
Helix 5
AA5
A
327 349Right-handed alpha
Helix 6
AA6
A
350 355Right-handed 310
Helix 7
AA7
A
397 415Right-handed alpha
Helix 8
AA8
A
423 435Right-handed alpha
Helix 9
AA9
A
439 444Right-handed alpha
Helix 10
AB1
A
445 449Right-handed 310
Helix 11
AB2
A
452 467Right-handed alpha
Helix 12
AB3
A
470 474Right-handed 310
Helix 13
AB4
A
476 489Right-handed alpha
Helix 14
AB5
B
217 225Right-handed alpha
Helix 15
AB6
B
260 264Right-handed 310
Helix 16
AB7
B
265 280Right-handed alpha
Helix 17
AB8
B
313 320Right-handed alpha
Helix 18
AB9
B
327 348Right-handed alpha
Helix 19
AC1
B
350 355Right-handed 310
Helix 20
AC2
B
397 415Right-handed alpha
Helix 21
AC3
B
427 435Right-handed alpha
Helix 22
AC4
B
439 444Right-handed alpha
Helix 23
AC5
B
452 467Right-handed alpha
Helix 24
AC6
B
470 474Right-handed 310
Helix 25
AC7
B
476 489Right-handed alpha
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There are 4 sheets in PDB entry 6CPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
238 244anti-parallel
Strand 3
A
250 256anti-parallel
Strand 4
A
301 307anti-parallel
Strand 5
A
290 296anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 364first strand
Strand 2
A
370 372anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
239 244anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
301 307anti-parallel
Strand 5
B
290 296anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 364first strand
Strand 2
B
370 372anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il