Analysis of interatomic Contacts of Structural Units in PDB entry:
6CQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CQB entry

There are 2 chains in PDB entry 6CQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10ILE 390
B
 ALA 10ILE 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6CQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 46Right-handed alpha
Helix 2
AA2
A
50 59Right-handed alpha
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
91 119Right-handed alpha
Helix 5
AA5
A
121 125Right-handed 310
Helix 6
AA6
A
140 150Right-handed alpha
Helix 7
AA7
A
166 182Right-handed alpha
Helix 8
AA8
A
207 214Right-handed alpha
Helix 9
AA9
A
271 278Right-handed alpha
Helix 10
AB1
A
279 289Right-handed alpha
Helix 11
AB2
A
290 292Right-handed 310
Helix 12
AB3
A
307 319Right-handed alpha
Helix 13
AB4
A
325 334Right-handed alpha
Helix 14
AB5
A
340 357Right-handed alpha
Helix 15
AB6
B
36 46Right-handed alpha
Helix 16
AB7
B
50 64Right-handed alpha
Helix 17
AB8
B
75 79Right-handed 310
Helix 18
AB9
B
91 119Right-handed alpha
Helix 19
AC1
B
121 125Right-handed 310
Helix 20
AC2
B
140 150Right-handed alpha
Helix 21
AC3
B
166 182Right-handed alpha
Helix 22
AC4
B
207 212Right-handed alpha
Helix 23
AC5
B
213 215Right-handed 310
Helix 24
AC6
B
271 278Right-handed alpha
Helix 25
AC7
B
279 289Right-handed alpha
Helix 26
AC8
B
290 292Right-handed 310
Helix 27
AC9
B
307 319Right-handed alpha
Helix 28
AD1
B
325 336Right-handed alpha
Helix 29
AD2
B
339 357Right-handed alpha
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There are 6 sheets in PDB entry 6CQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 161first strand
Strand 2
A
127 132parallel
Strand 3
A
186 193parallel
Strand 4
A
219 226anti-parallel
Strand 5
A
19 26anti-parallel
Strand 6
A
238 247anti-parallel
Strand 7
A
379 387anti-parallel
Strand 8
A
368 375anti-parallel
Strand 9
A
300 303parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
68 70anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
B
255 260anti-parallel
Strand 3
B
263 268anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
255 260anti-parallel
Strand 3
B
137 138anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 161first strand
Strand 2
B
127 132parallel
Strand 3
B
186 193parallel
Strand 4
B
219 226anti-parallel
Strand 5
B
19 26anti-parallel
Strand 6
B
238 247anti-parallel
Strand 7
B
379 387anti-parallel
Strand 8
B
368 375anti-parallel
Strand 9
B
300 303parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
68 70anti-parallel
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