Analysis of interatomic Contacts of Structural Units in PDB entry:
6CQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CQI entry

There are 2 chains in PDB entry 6CQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16THR 704
B
 T 2 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6CQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 37Right-handed alpha
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
89 100Right-handed alpha
Helix 5
AA5
A
101 103Right-handed 310
Helix 6
AA6
A
113 128Right-handed alpha
Helix 7
AA7
A
142 151Right-handed alpha
Helix 8
AA8
A
157 186Right-handed alpha
Helix 9
AA9
A
195 212Right-handed alpha
Helix 10
AB1
A
253 257Right-handed 310
Helix 11
AB2
A
273 282Right-handed alpha
Helix 12
AB3
A
308 321Right-handed alpha
Helix 13
AB4
A
323 337Right-handed alpha
Helix 14
AB5
A
351 367Right-handed alpha
Helix 15
AB6
A
401 409Right-handed alpha
Helix 16
AB7
A
414 430Right-handed alpha
Helix 17
AB8
A
465 470Right-handed 310
Helix 18
AB9
A
518 529Right-handed alpha
Helix 19
AC1
A
536 547Right-handed alpha
Helix 20
AC2
A
560 574Right-handed alpha
Helix 21
AC3
A
575 579Right-handed 310
Helix 22
AC4
A
581 595Right-handed alpha
Helix 23
AC5
A
601 610Right-handed alpha
Helix 24
AC6
A
624 633Right-handed alpha
Helix 25
AC7
A
637 642Right-handed alpha
Helix 26
AC8
A
694 704Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6CQI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
19 23parallel
Strand 3
A
105 108parallel
Strand 4
A
133 135parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 225first strand
Strand 2
A
239 246anti-parallel
Strand 3
A
451 461anti-parallel
Strand 4
A
438 448anti-parallel
Strand 5
A
288 298anti-parallel
Strand 6
A
498 510anti-parallel
Strand 7
A
217 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
269 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
556 559anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 648first strand
Strand 2
A
654 660anti-parallel
Strand 3
A
663 672anti-parallel
Strand 4
A
675 683anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il