Analysis of interatomic Contacts of Structural Units in PDB entry:
6CQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CQO entry

There are 8 chains in PDB entry 6CQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 17LYS 120
B
 MSE 17LYS 121
C
 ASP 18LYS 120
D
 MSE 17GLY 119
E
 MSE 17LYS 120
F
 MSE 17GLY 119
G
 MSE 17GLY 119
H
 MSE 17GLY 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6CQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 78Right-handed alpha
Helix 2
AA2
B
67 77Right-handed alpha
Helix 3
AA3
C
67 77Right-handed alpha
Helix 4
AA4
D
67 78Right-handed alpha
Helix 5
AA5
E
67 77Right-handed alpha
Helix 6
AA6
F
67 77Right-handed alpha
Helix 7
AA7
G
67 78Right-handed alpha
Helix 8
AA8
H
67 78Right-handed alpha
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There are 11 sheets in PDB entry 6CQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
105 117parallel
Strand 5
A
83 93anti-parallel
Strand 6
A
19 28anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
19 28anti-parallel
Strand 4
G
19 28anti-parallel
Strand 5
G
44 50anti-parallel
Strand 6
G
59 65anti-parallel
Strand 7
G
105 117parallel
Strand 8
G
83 93anti-parallel
Strand 9
G
19 28anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
102 117parallel
Strand 5
B
83 96anti-parallel
Strand 6
B
19 28anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
19 28anti-parallel
Strand 4
F
19 28anti-parallel
Strand 5
F
44 50anti-parallel
Strand 6
F
33 34anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
33 34first strand
Strand 2
F
44 50anti-parallel
Strand 3
F
59 65anti-parallel
Strand 4
F
104 117parallel
Strand 5
F
83 94anti-parallel
Strand 6
F
19 28anti-parallel
Strand 7
B
19 28anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
43 50anti-parallel
Strand 3
C
59 65anti-parallel
Strand 4
C
103 117parallel
Strand 5
C
83 95anti-parallel
Strand 6
C
19 28anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
43 50anti-parallel
Strand 3
C
19 28anti-parallel
Strand 4
D
19 28anti-parallel
Strand 5
D
42 50anti-parallel
Strand 6
D
33 36anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 36first strand
Strand 2
D
42 50anti-parallel
Strand 3
D
59 65anti-parallel
Strand 4
D
104 117parallel
Strand 5
D
83 94anti-parallel
Strand 6
D
19 28anti-parallel
Strand 7
C
19 28anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 27first strand
Strand 2
E
83 92anti-parallel
Strand 3
E
106 117anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
44 50anti-parallel
Strand 3
E
59 65anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
33 35first strand
Strand 2
H
43 50anti-parallel
Strand 3
H
59 65anti-parallel
Strand 4
H
107 117parallel
Strand 5
H
83 91anti-parallel
Strand 6
H
21 28anti-parallel
Strand 7
H
43 50anti-parallel
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