Analysis of interatomic Contacts of Structural Units in PDB entry:
6CRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CRD entry

There are 8 chains in PDB entry 6CRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 32	LEU 468
B	GLY 32	LEU 468
C	ILE 35	LEU 468
D	ILE 35	LEU 468
E	GLY 32	LEU 468
F	GLY 32	LEU 468
G	ILE 35	LEU 468
H	ILE 35	LEU 468

There are 40 helices in PDB entry 6CRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	78	Right-handed alpha
Helix 2	AA2	A	104	110	Right-handed alpha
Helix 3	AA3	A	142	146	Right-handed 310
Helix 4	AA4	A	356	359	Right-handed 310
Helix 5	AA5	A	463	468	Right-handed alpha
Helix 6	AA6	B	33	79	Right-handed alpha
Helix 7	AA7	B	104	109	Right-handed alpha
Helix 8	AA8	B	142	146	Right-handed 310
Helix 9	AA9	B	463	468	Right-handed 310
Helix 10	AB1	C	37	77	Right-handed alpha
Helix 11	AB2	C	104	109	Right-handed alpha
Helix 12	AB3	C	142	146	Right-handed 310
Helix 13	AB4	C	463	468	Right-handed 310
Helix 14	AB5	D	36	78	Right-handed alpha
Helix 15	AB6	D	104	110	Right-handed alpha
Helix 16	AB7	D	142	146	Right-handed 310
Helix 17	AB8	D	463	468	Right-handed 310
Helix 18	AB9	E	35	78	Right-handed alpha
Helix 19	AC1	E	104	109	Right-handed alpha
Helix 20	AC2	E	110	112	Right-handed 310
Helix 21	AC3	E	142	146	Right-handed 310
Helix 22	AC4	E	463	468	Right-handed 310
Helix 23	AC5	F	37	46	Right-handed alpha
Helix 24	AC6	F	46	78	Right-handed alpha
Helix 25	AC7	F	104	109	Right-handed alpha
Helix 26	AC8	F	142	146	Right-handed 310
Helix 27	AC9	F	197	200	Right-handed 310
Helix 28	AD1	F	381	385	Right-handed 310
Helix 29	AD2	F	463	468	Right-handed 310
Helix 30	AD3	G	36	79	Right-handed alpha
Helix 31	AD4	G	107	111	Right-handed 310
Helix 32	AD5	G	142	146	Right-handed 310
Helix 33	AD6	G	197	200	Right-handed 310
Helix 34	AD7	G	464	468	Right-handed 310
Helix 35	AD8	H	37	78	Right-handed alpha
Helix 36	AD9	H	104	109	Right-handed alpha
Helix 37	AE1	H	142	146	Right-handed 310
Helix 38	AE2	H	197	200	Right-handed 310
Helix 39	AE3	H	356	359	Right-handed 310
Helix 40	AE4	H	463	467	Right-handed 310

There are 51 sheets in PDB entry 6CRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	102	first strand
Strand 2	A	439	449	anti-parallel
Strand 3	A	421	429	anti-parallel
Strand 4	A	407	410	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	125	first strand
Strand 2	A	128	139	anti-parallel
Strand 3	A	157	162	anti-parallel
Strand 4	A	172	176	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	184	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	202	207	anti-parallel
Strand 4	A	210	216	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	244	first strand
Strand 2	A	250	258	anti-parallel
Strand 3	A	261	267	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	283	first strand
Strand 2	A	286	292	anti-parallel
Strand 3	A	301	305	anti-parallel
Strand 4	A	314	316	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	361	364	anti-parallel
Strand 3	A	372	378	anti-parallel
Strand 4	A	392	403	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	439	449	anti-parallel
Strand 3	B	421	429	anti-parallel
Strand 4	B	407	410	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	125	first strand
Strand 2	B	128	139	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	172	176	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	184	first strand
Strand 2	B	189	195	anti-parallel
Strand 3	B	202	207	anti-parallel
Strand 4	B	210	216	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	256	258	anti-parallel
Strand 3	B	261	264	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	250	253	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	283	first strand
Strand 2	B	286	292	anti-parallel
Strand 3	B	301	306	anti-parallel
Strand 4	B	311	316	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	361	364	anti-parallel
Strand 3	B	372	378	anti-parallel
Strand 4	B	396	403	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	102	first strand
Strand 2	C	439	448	anti-parallel
Strand 3	C	421	429	anti-parallel
Strand 4	C	407	410	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	125	first strand
Strand 2	C	128	139	anti-parallel
Strand 3	C	157	162	anti-parallel
Strand 4	C	172	176	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	184	first strand
Strand 2	C	189	195	anti-parallel
Strand 3	C	202	207	anti-parallel
Strand 4	C	210	216	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	244	first strand
Strand 2	C	250	258	anti-parallel
Strand 3	C	261	267	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	283	first strand
Strand 2	C	286	292	anti-parallel
Strand 3	C	301	305	anti-parallel
Strand 4	C	312	316	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	361	364	anti-parallel
Strand 3	C	372	378	anti-parallel
Strand 4	C	392	403	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	102	first strand
Strand 2	D	439	449	anti-parallel
Strand 3	D	421	429	anti-parallel
Strand 4	D	407	410	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	128	135	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	184	first strand
Strand 2	D	189	195	anti-parallel
Strand 3	D	202	207	anti-parallel
Strand 4	D	210	216	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	244	first strand
Strand 2	D	250	258	anti-parallel
Strand 3	D	261	267	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	283	first strand
Strand 2	D	286	292	anti-parallel
Strand 3	D	301	306	anti-parallel
Strand 4	D	311	316	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	361	364	anti-parallel
Strand 3	D	372	378	anti-parallel
Strand 4	D	392	403	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	102	first strand
Strand 2	E	439	449	anti-parallel
Strand 3	E	421	429	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	125	first strand
Strand 2	E	128	139	anti-parallel
Strand 3	E	157	162	anti-parallel
Strand 4	E	172	176	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	184	first strand
Strand 2	E	189	195	anti-parallel
Strand 3	E	202	207	anti-parallel
Strand 4	E	210	216	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	241	first strand
Strand 2	E	253	258	anti-parallel
Strand 3	E	261	267	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	283	first strand
Strand 2	E	286	290	anti-parallel
Strand 3	E	301	306	anti-parallel
Strand 4	E	311	316	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	354	first strand
Strand 2	E	361	364	anti-parallel
Strand 3	E	372	378	anti-parallel
Strand 4	E	392	403	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	91	first strand
Strand 2	F	417	418	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	102	first strand
Strand 2	F	440	449	anti-parallel
Strand 3	F	421	428	anti-parallel
Strand 4	F	407	410	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	125	first strand
Strand 2	F	128	139	anti-parallel
Strand 3	F	157	162	anti-parallel
Strand 4	F	175	176	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	184	first strand
Strand 2	F	189	195	anti-parallel
Strand 3	F	202	207	anti-parallel
Strand 4	F	211	216	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	241	first strand
Strand 2	F	253	258	anti-parallel
Strand 3	F	261	267	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	283	first strand
Strand 2	F	286	290	anti-parallel
Strand 3	F	301	305	anti-parallel
Strand 4	F	314	316	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	354	first strand
Strand 2	F	361	364	anti-parallel
Strand 3	F	372	378	anti-parallel
Strand 4	F	392	403	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	417	418	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	102	first strand
Strand 2	G	439	449	anti-parallel
Strand 3	G	421	429	anti-parallel
Strand 4	G	407	410	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	124	first strand
Strand 2	G	129	139	anti-parallel
Strand 3	G	157	162	anti-parallel
Strand 4	G	172	176	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	179	184	first strand
Strand 2	G	189	195	anti-parallel
Strand 3	G	202	207	anti-parallel
Strand 4	G	210	216	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	237	241	first strand
Strand 2	G	253	258	anti-parallel
Strand 3	G	261	267	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	276	282	first strand
Strand 2	G	287	292	anti-parallel
Strand 3	G	301	306	anti-parallel
Strand 4	G	311	316	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	353	354	first strand
Strand 2	G	361	365	anti-parallel
Strand 3	G	372	378	anti-parallel
Strand 4	G	392	403	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	102	first strand
Strand 2	H	441	449	anti-parallel
Strand 3	H	420	427	anti-parallel
Strand 4	H	407	411	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	128	134	anti-parallel
Strand 3	H	158	162	anti-parallel
Strand 4	H	172	173	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	180	184	first strand
Strand 2	H	189	195	anti-parallel
Strand 3	H	202	206	anti-parallel
Strand 4	H	211	216	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	239	243	first strand
Strand 2	H	251	256	anti-parallel
Strand 3	H	264	267	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	279	283	first strand
Strand 2	H	286	290	anti-parallel
Strand 3	H	301	306	anti-parallel
Strand 4	H	311	316	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	353	354	first strand
Strand 2	H	361	365	anti-parallel
Strand 3	H	372	378	anti-parallel
Strand 4	H	394	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CRD