Analysis of interatomic Contacts of Structural Units in PDB entry:
6CRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CRM entry

There are 2 chains in PDB entry 6CRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ALA 516
B
 G 19 A 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6CRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 20Right-handed alpha
Helix 2
AA2
A
29 39Right-handed alpha
Helix 3
AA3
A
54 64Right-handed alpha
Helix 4
AA4
A
74 88Right-handed alpha
Helix 5
AA5
A
100 114Right-handed alpha
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
128 136Right-handed alpha
Helix 8
AA8
A
148 155Right-handed alpha
Helix 9
AA9
A
159 163Right-handed 310
Helix 10
AB1
A
164 172Right-handed alpha
Helix 11
AB2
A
185 197Right-handed alpha
Helix 12
AB3
A
222 233Right-handed alpha
Helix 13
AB4
A
245 258Right-handed alpha
Helix 14
AB5
A
271 284Right-handed alpha
Helix 15
AB6
A
316 325Right-handed alpha
Helix 16
AB7
A
341 354Right-handed alpha
Helix 17
AB8
A
358 377Right-handed alpha
Helix 18
AB9
A
380 389Right-handed alpha
Helix 19
AC1
A
400 405Right-handed alpha
Helix 20
AC2
A
412 425Right-handed alpha
Helix 21
AC3
A
431 440Right-handed alpha
Helix 22
AC4
A
445 450Right-handed alpha
Helix 23
AC5
A
465 479Right-handed alpha
Helix 24
AC6
A
486 489Right-handed 310
Helix 25
AC7
A
498 503Right-handed alpha
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There are 4 sheets in PDB entry 6CRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
118 121parallel
Strand 3
A
67 71parallel
Strand 4
A
140 145parallel
Strand 5
A
177 181parallel
Strand 6
A
43 46parallel
Strand 7
A
202 205parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 219first strand
Strand 2
A
334 340parallel
Strand 3
A
307 310parallel
Strand 4
A
239 242parallel
Strand 5
A
289 292parallel
Strand 6
A
263 266parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
509 511anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 485first strand
Strand 2
A
491 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il