Analysis of interatomic Contacts of Structural Units in PDB entry:
6CRN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CRN entry

There are 4 chains in PDB entry 6CRN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 280	SER 626
B	SER 277	GLN 623
C	SER 277	GLN 623
D	GLY 280	LEU 517

There are 51 helices in PDB entry 6CRN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	299	309	Right-handed alpha
Helix 2	AA2	A	310	319	Right-handed alpha
Helix 3	AA3	A	336	350	Right-handed alpha
Helix 4	AA4	A	359	370	Right-handed alpha
Helix 5	AA5	A	371	374	Right-handed 310
Helix 6	AA6	A	382	396	Right-handed alpha
Helix 7	AA7	A	414	430	Right-handed alpha
Helix 8	AA8	A	432	439	Right-handed alpha
Helix 9	AA9	A	478	486	Right-handed alpha
Helix 10	AB1	A	531	534	Right-handed 310
Helix 11	AB2	A	552	555	Right-handed 310
Helix 12	AB3	A	606	610	Right-handed 310
Helix 13	AB4	B	299	309	Right-handed alpha
Helix 14	AB5	B	310	319	Right-handed alpha
Helix 15	AB6	B	322	326	Right-handed 310
Helix 16	AB7	B	336	350	Right-handed alpha
Helix 17	AB8	B	359	370	Right-handed alpha
Helix 18	AB9	B	371	374	Right-handed 310
Helix 19	AC1	B	382	396	Right-handed alpha
Helix 20	AC2	B	414	430	Right-handed alpha
Helix 21	AC3	B	432	439	Right-handed alpha
Helix 22	AC4	B	478	486	Right-handed alpha
Helix 23	AC5	B	552	555	Right-handed 310
Helix 24	AC6	B	606	610	Right-handed 310
Helix 25	AC7	C	299	309	Right-handed alpha
Helix 26	AC8	C	310	319	Right-handed alpha
Helix 27	AC9	C	322	326	Right-handed 310
Helix 28	AD1	C	336	350	Right-handed alpha
Helix 29	AD2	C	359	370	Right-handed alpha
Helix 30	AD3	C	371	374	Right-handed 310
Helix 31	AD4	C	382	396	Right-handed alpha
Helix 32	AD5	C	414	430	Right-handed alpha
Helix 33	AD6	C	432	439	Right-handed alpha
Helix 34	AD7	C	478	486	Right-handed alpha
Helix 35	AD8	C	552	555	Right-handed 310
Helix 36	AD9	C	606	610	Right-handed 310
Helix 37	AE1	D	299	309	Right-handed alpha
Helix 38	AE2	D	310	319	Right-handed alpha
Helix 39	AE3	D	336	350	Right-handed alpha
Helix 40	AE4	D	359	370	Right-handed alpha
Helix 41	AE5	D	382	396	Right-handed alpha
Helix 42	AE6	D	414	430	Right-handed alpha
Helix 43	AE7	D	432	439	Right-handed alpha
Helix 44	AE8	D	478	486	Right-handed alpha
Helix 45	AE9	D	552	555	Right-handed 310
Helix 46	AF1	D	606	610	Right-handed 310
Helix 47	AF2	E	22	35	Right-handed alpha
Helix 48	AF3	F	22	35	Right-handed alpha
Helix 49	AF4	F	37	39	Right-handed 310
Helix 50	AF5	G	22	35	Right-handed alpha
Helix 51	AF6	H	22	35	Right-handed alpha

There are 29 sheets in PDB entry 6CRN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	356	357	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	461	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	509	516	anti-parallel
Strand 4	A	489	490	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	A	520	525	parallel
Strand 3	A	615	622	anti-parallel
Strand 4	A	564	574	anti-parallel
Strand 5	A	549	550	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	A	520	525	parallel
Strand 3	A	615	622	anti-parallel
Strand 4	A	564	574	anti-parallel
Strand 5	A	581	587	anti-parallel
Strand 6	A	594	598	anti-parallel
Strand 7	A	601	605	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	541	543	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	504	506	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	530	first strand
Strand 2	A	535	537	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	356	357	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	461	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	509	516	anti-parallel
Strand 4	B	489	490	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	467	first strand
Strand 2	B	520	526	parallel
Strand 3	B	615	622	anti-parallel
Strand 4	B	564	574	anti-parallel
Strand 5	B	549	550	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	467	first strand
Strand 2	B	520	526	parallel
Strand 3	B	615	622	anti-parallel
Strand 4	B	564	574	anti-parallel
Strand 5	B	581	587	anti-parallel
Strand 6	B	594	598	anti-parallel
Strand 7	B	601	605	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	541	543	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	504	506	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	356	357	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	461	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	509	516	anti-parallel
Strand 4	C	489	490	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	467	first strand
Strand 2	C	520	526	parallel
Strand 3	C	615	622	anti-parallel
Strand 4	C	564	574	anti-parallel
Strand 5	C	549	550	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	467	first strand
Strand 2	C	520	526	parallel
Strand 3	C	615	622	anti-parallel
Strand 4	C	564	574	anti-parallel
Strand 5	C	581	587	anti-parallel
Strand 6	C	594	598	anti-parallel
Strand 7	C	601	605	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	477	first strand
Strand 2	C	541	543	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	499	first strand
Strand 2	C	504	506	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	291	first strand
Strand 2	D	356	357	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	461	first strand
Strand 2	D	440	447	anti-parallel
Strand 3	D	509	516	anti-parallel
Strand 4	D	489	490	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	466	first strand
Strand 2	D	520	525	parallel
Strand 3	D	615	622	anti-parallel
Strand 4	D	564	574	anti-parallel
Strand 5	D	549	550	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	466	first strand
Strand 2	D	520	525	parallel
Strand 3	D	615	622	anti-parallel
Strand 4	D	564	574	anti-parallel
Strand 5	D	581	587	anti-parallel
Strand 6	D	594	598	anti-parallel
Strand 7	D	601	605	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	477	first strand
Strand 2	D	541	543	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	530	first strand
Strand 2	D	535	537	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	17	first strand
Strand 2	E	1	6	anti-parallel
Strand 3	E	66	70	parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	17	first strand
Strand 2	F	1	6	anti-parallel
Strand 3	F	66	71	parallel
Strand 4	F	41	45	anti-parallel
Strand 5	F	48	50	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	17	first strand
Strand 2	G	1	6	anti-parallel
Strand 3	G	66	70	parallel
Strand 4	G	42	45	anti-parallel
Strand 5	G	48	49	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	17	first strand
Strand 2	H	1	6	anti-parallel
Strand 3	H	66	69	parallel
Strand 4	H	43	45	anti-parallel
Strand 5	H	48	50	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CRN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CRN