Analysis of interatomic Contacts of Structural Units in PDB entry:
6CSM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CSM entry

There are 4 chains in PDB entry 6CSM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	ASP 278
B	ILE 4	PRO 273
C	ILE 4	PRO 273
D	ILE 4	GLU 280

There are 44 helices in PDB entry 6CSM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	18	Right-handed alpha
Helix 2	AA2	A	18	24	Right-handed alpha
Helix 3	AA3	A	29	53	Right-handed alpha
Helix 4	AA4	A	59	77	Right-handed alpha
Helix 5	AA5	A	92	111	Right-handed alpha
Helix 6	AA6	A	122	141	Right-handed alpha
Helix 7	AA7	A	145	181	Right-handed alpha
Helix 8	AA8	A	183	205	Right-handed alpha
Helix 9	AA9	A	205	214	Right-handed alpha
Helix 10	AB1	A	222	238	Right-handed alpha
Helix 11	AB2	A	239	250	Right-handed alpha
Helix 12	AB3	B	12	18	Right-handed alpha
Helix 13	AB4	B	18	23	Right-handed alpha
Helix 14	AB5	B	29	53	Right-handed alpha
Helix 15	AB6	B	59	77	Right-handed alpha
Helix 16	AB7	B	92	111	Right-handed alpha
Helix 17	AB8	B	122	141	Right-handed alpha
Helix 18	AB9	B	145	181	Right-handed alpha
Helix 19	AC1	B	183	205	Right-handed alpha
Helix 20	AC2	B	205	214	Right-handed alpha
Helix 21	AC3	B	222	238	Right-handed alpha
Helix 22	AC4	B	239	250	Right-handed alpha
Helix 23	AC5	C	12	18	Right-handed alpha
Helix 24	AC6	C	18	24	Right-handed alpha
Helix 25	AC7	C	29	53	Right-handed alpha
Helix 26	AC8	C	59	77	Right-handed alpha
Helix 27	AC9	C	92	111	Right-handed alpha
Helix 28	AD1	C	122	141	Right-handed alpha
Helix 29	AD2	C	145	181	Right-handed alpha
Helix 30	AD3	C	183	205	Right-handed alpha
Helix 31	AD4	C	205	214	Right-handed alpha
Helix 32	AD5	C	222	238	Right-handed alpha
Helix 33	AD6	C	239	250	Right-handed alpha
Helix 34	AD7	D	12	18	Right-handed alpha
Helix 35	AD8	D	18	23	Right-handed alpha
Helix 36	AD9	D	29	53	Right-handed alpha
Helix 37	AE1	D	59	77	Right-handed alpha
Helix 38	AE2	D	92	111	Right-handed alpha
Helix 39	AE3	D	122	141	Right-handed alpha
Helix 40	AE4	D	145	181	Right-handed alpha
Helix 41	AE5	D	183	205	Right-handed alpha
Helix 42	AE6	D	205	214	Right-handed alpha
Helix 43	AE7	D	222	238	Right-handed alpha
Helix 44	AE8	D	239	250	Right-handed alpha

There are 8 sheets in PDB entry 6CSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	89	91	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	120	121	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	89	91	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	120	121	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	89	91	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	120	121	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	89	91	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	120	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CSM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CSM