Analysis of interatomic Contacts of Structural Units in PDB entry:
6CSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CSS entry

There are 2 chains in PDB entry 6CSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 442ARG 798
B
 SER 441ARG 798
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6CSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
449 455Right-handed 310
Helix 2
AA2
A
467 480Right-handed alpha
Helix 3
AA3
A
482 486Right-handed 310
Helix 4
AA4
A
495 500Right-handed alpha
Helix 5
AA5
A
504 514Right-handed alpha
Helix 6
AA6
A
515 517Right-handed 310
Helix 7
AA7
A
518 528Right-handed alpha
Helix 8
AA8
A
537 558Right-handed alpha
Helix 9
AA9
A
587 600Right-handed alpha
Helix 10
AB1
A
616 624Right-handed alpha
Helix 11
AB2
A
638 641Right-handed 310
Helix 12
AB3
A
646 650Right-handed 310
Helix 13
AB4
A
656 660Right-handed 310
Helix 14
AB5
A
674 685Right-handed alpha
Helix 15
AB6
A
685 694Right-handed alpha
Helix 16
AB7
A
718 730Right-handed alpha
Helix 17
AB8
A
731 735Right-handed 310
Helix 18
AB9
A
746 762Right-handed alpha
Helix 19
AC1
A
776 791Right-handed alpha
Helix 20
AC2
A
794 798Right-handed 310
Helix 21
AC3
B
450 454Right-handed 310
Helix 22
AC4
B
467 480Right-handed alpha
Helix 23
AC5
B
482 486Right-handed 310
Helix 24
AC6
B
495 500Right-handed alpha
Helix 25
AC7
B
504 514Right-handed alpha
Helix 26
AC8
B
515 517Right-handed 310
Helix 27
AC9
B
518 529Right-handed alpha
Helix 28
AD1
B
537 558Right-handed alpha
Helix 29
AD2
B
587 600Right-handed alpha
Helix 30
AD3
B
616 624Right-handed alpha
Helix 31
AD4
B
638 641Right-handed 310
Helix 32
AD5
B
646 650Right-handed 310
Helix 33
AD6
B
656 660Right-handed 310
Helix 34
AD7
B
674 685Right-handed alpha
Helix 35
AD8
B
685 694Right-handed alpha
Helix 36
AD9
B
718 730Right-handed alpha
Helix 37
AE1
B
731 735Right-handed 310
Helix 38
AE2
B
746 762Right-handed alpha
Helix 39
AE3
B
776 791Right-handed alpha
Helix 40
AE4
B
794 798Right-handed 310
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There are 2 sheets in PDB entry 6CSS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
444 447parallel
Strand 3
A
563 566parallel
Strand 4
A
737 741parallel
Strand 5
A
697 702parallel
Strand 6
A
606 610parallel
Strand 7
A
629 636parallel
Strand 8
A
663 668parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
487 488first strand
Strand 2
B
444 448parallel
Strand 3
B
563 567parallel
Strand 4
B
737 741parallel
Strand 5
B
697 702parallel
Strand 6
B
606 610parallel
Strand 7
B
629 636parallel
Strand 8
B
663 668parallel
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