Analysis of interatomic Contacts of Structural Units in PDB entry:
6CTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CTH entry

There is 1 chain in PDB entry 6CTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 254ILE 554
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6CTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
258 267Right-handed alpha
Helix 2
AA2
A
270 272Right-handed 310
Helix 3
AA3
A
305 319Right-handed alpha
Helix 4
AA4
A
350 356Right-handed alpha
Helix 5
AA5
A
363 384Right-handed alpha
Helix 6
AA6
A
395 397Right-handed 310
Helix 7
AA7
A
437 444Right-handed alpha
Helix 8
AA8
A
447 465Right-handed alpha
Helix 9
AA9
A
480 491Right-handed alpha
Helix 10
AB1
A
493 498Right-handed 310
Helix 11
AB2
A
499 503Right-handed 310
Helix 12
AB3
A
507 522Right-handed alpha
Helix 13
AB4
A
525 529Right-handed 310
Helix 14
AB5
A
531 540Right-handed alpha
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There are 3 sheets in PDB entry 6CTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
329 335parallel
Strand 3
A
338 344anti-parallel
Strand 4
A
293 300anti-parallel
Strand 5
A
281 288anti-parallel
Strand 6
A
274 277anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
416 418anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 401first strand
Strand 2
A
407 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il