Analysis of interatomic Contacts of Structural Units in PDB entry:
6CTY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CTY entry

There are 14 chains in PDB entry 6CTY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	ALA 102
A	LEU 104	SER 263
A	GLY 265	GLY 265
A	ALA 267	ARG 348
B	PRO 5	ALA 102
B	LEU 104	SER 263
B	GLY 265	GLY 265
B	ALA 267	LYS 347
C	TYR -5	ALA 102
C	LEU 104	SER 263
C	GLY 265	GLY 265
C	ALA 267	LYS 347
D	PRO 5	ALA 102
D	LEU 104	ARG 245

There are108 helices in PDB entry 6CTY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	35	Right-handed alpha
Helix 2	AA2	A	52	67	Right-handed alpha
Helix 3	AA3	A	86	96	Right-handed alpha
Helix 4	AA4	A	119	122	Right-handed 310
Helix 5	AA5	A	123	134	Right-handed alpha
Helix 6	AA6	A	149	151	Right-handed 310
Helix 7	AA7	A	152	161	Right-handed alpha
Helix 8	AA8	A	161	169	Right-handed alpha
Helix 9	AA9	A	181	190	Right-handed alpha
Helix 10	AB1	A	200	206	Right-handed alpha
Helix 11	AB2	A	207	213	Right-handed alpha
Helix 12	AB3	A	217	221	Right-handed 310
Helix 13	AB4	A	228	241	Right-handed alpha
Helix 14	AB5	A	256	261	Right-handed alpha
Helix 15	AB6	A	274	286	Right-handed alpha
Helix 16	AB7	A	288	290	Right-handed 310
Helix 17	AB8	A	291	298	Right-handed alpha
Helix 18	AB9	A	298	305	Right-handed alpha
Helix 19	AC1	B	22	35	Right-handed alpha
Helix 20	AC2	B	52	67	Right-handed alpha
Helix 21	AC3	B	86	96	Right-handed alpha
Helix 22	AC4	B	119	122	Right-handed 310
Helix 23	AC5	B	123	134	Right-handed alpha
Helix 24	AC6	B	149	151	Right-handed 310
Helix 25	AC7	B	152	161	Right-handed alpha
Helix 26	AC8	B	161	169	Right-handed alpha
Helix 27	AC9	B	181	190	Right-handed alpha
Helix 28	AD1	B	200	206	Right-handed alpha
Helix 29	AD2	B	207	213	Right-handed alpha
Helix 30	AD3	B	217	221	Right-handed 310
Helix 31	AD4	B	228	241	Right-handed alpha
Helix 32	AD5	B	256	261	Right-handed alpha
Helix 33	AD6	B	274	286	Right-handed alpha
Helix 34	AD7	B	288	290	Right-handed 310
Helix 35	AD8	B	291	298	Right-handed alpha
Helix 36	AD9	B	298	305	Right-handed alpha
Helix 37	AE1	C	22	35	Right-handed alpha
Helix 38	AE2	C	52	67	Right-handed alpha
Helix 39	AE3	C	86	96	Right-handed alpha
Helix 40	AE4	C	119	122	Right-handed 310
Helix 41	AE5	C	123	134	Right-handed alpha
Helix 42	AE6	C	149	151	Right-handed 310
Helix 43	AE7	C	152	161	Right-handed alpha
Helix 44	AE8	C	161	169	Right-handed alpha
Helix 45	AE9	C	181	190	Right-handed alpha
Helix 46	AF1	C	200	206	Right-handed alpha
Helix 47	AF2	C	207	213	Right-handed alpha
Helix 48	AF3	C	217	221	Right-handed 310
Helix 49	AF4	C	228	241	Right-handed alpha
Helix 50	AF5	C	256	261	Right-handed alpha
Helix 51	AF6	C	274	286	Right-handed alpha
Helix 52	AF7	C	288	290	Right-handed 310
Helix 53	AF8	C	291	298	Right-handed alpha
Helix 54	AF9	C	298	305	Right-handed alpha
Helix 55	AG1	D	22	35	Right-handed alpha
Helix 56	AG2	D	52	67	Right-handed alpha
Helix 57	AG3	D	86	96	Right-handed alpha
Helix 58	AG4	D	119	122	Right-handed 310
Helix 59	AG5	D	123	134	Right-handed alpha
Helix 60	AG6	D	149	151	Right-handed 310
Helix 61	AG7	D	152	161	Right-handed alpha
Helix 62	AG8	D	161	169	Right-handed alpha
Helix 63	AG9	D	181	190	Right-handed alpha
Helix 64	AH1	D	200	206	Right-handed alpha
Helix 65	AH2	D	207	213	Right-handed alpha
Helix 66	AH3	D	217	221	Right-handed 310
Helix 67	AH4	D	228	241	Right-handed alpha
Helix 68	AH5	D	256	261	Right-handed alpha
Helix 69	AH6	D	274	286	Right-handed alpha
Helix 70	AH7	D	288	290	Right-handed 310
Helix 71	AH8	D	291	298	Right-handed alpha
Helix 72	AH9	D	298	305	Right-handed alpha
Helix 73	AI1	E	22	35	Right-handed alpha
Helix 74	AI2	E	52	67	Right-handed alpha
Helix 75	AI3	E	86	96	Right-handed alpha
Helix 76	AI4	E	119	122	Right-handed 310
Helix 77	AI5	E	123	134	Right-handed alpha
Helix 78	AI6	E	149	151	Right-handed 310
Helix 79	AI7	E	152	161	Right-handed alpha
Helix 80	AI8	E	161	169	Right-handed alpha
Helix 81	AI9	E	181	190	Right-handed alpha
Helix 82	AJ1	E	200	206	Right-handed alpha
Helix 83	AJ2	E	207	213	Right-handed alpha
Helix 84	AJ3	E	217	221	Right-handed 310
Helix 85	AJ4	E	228	241	Right-handed alpha
Helix 86	AJ5	E	256	261	Right-handed alpha
Helix 87	AJ6	E	274	286	Right-handed alpha
Helix 88	AJ7	E	288	290	Right-handed 310
Helix 89	AJ8	E	291	298	Right-handed alpha
Helix 90	AJ9	E	298	305	Right-handed alpha
Helix 91	AK1	F	22	35	Right-handed alpha
Helix 92	AK2	F	52	67	Right-handed alpha
Helix 93	AK3	F	86	96	Right-handed alpha
Helix 94	AK4	F	119	122	Right-handed 310
Helix 95	AK5	F	123	134	Right-handed alpha
Helix 96	AK6	F	149	151	Right-handed 310
Helix 97	AK7	F	152	161	Right-handed alpha
Helix 98	AK8	F	161	169	Right-handed alpha
Helix 99	AK9	F	181	190	Right-handed alpha
Helix 100	AL1	F	200	206	Right-handed alpha
Helix 101	AL2	F	207	213	Right-handed alpha
Helix 102	AL3	F	217	221	Right-handed 310
Helix 103	AL4	F	228	241	Right-handed alpha
Helix 104	AL5	F	256	261	Right-handed alpha
Helix 105	AL6	F	274	286	Right-handed alpha
Helix 106	AL7	F	288	290	Right-handed 310
Helix 107	AL8	F	291	298	Right-handed alpha
Helix 108	AL9	F	298	305	Right-handed alpha

There are 24 sheets in PDB entry 6CTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	312	316	anti-parallel
Strand 3	A	345	346	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	39	42	parallel
Strand 3	A	74	80	parallel
Strand 4	A	99	104	parallel
Strand 5	A	137	139	parallel
Strand 6	A	174	176	parallel
Strand 7	A	195	199	parallel
Strand 8	A	246	248	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	341	342	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	331	333	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	312	316	anti-parallel
Strand 3	B	345	346	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	39	42	parallel
Strand 3	B	74	80	parallel
Strand 4	B	99	104	parallel
Strand 5	B	137	139	parallel
Strand 6	B	174	176	parallel
Strand 7	B	195	199	parallel
Strand 8	B	246	248	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	341	342	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	331	333	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	312	316	anti-parallel
Strand 3	C	345	346	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	39	42	parallel
Strand 3	C	74	80	parallel
Strand 4	C	99	104	parallel
Strand 5	C	137	139	parallel
Strand 6	C	174	176	parallel
Strand 7	C	195	199	parallel
Strand 8	C	246	248	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	321	first strand
Strand 2	C	341	342	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	328	first strand
Strand 2	C	331	333	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	312	316	anti-parallel
Strand 3	D	345	346	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	39	42	parallel
Strand 3	D	74	80	parallel
Strand 4	D	99	104	parallel
Strand 5	D	137	139	parallel
Strand 6	D	174	176	parallel
Strand 7	D	195	199	parallel
Strand 8	D	246	248	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	321	first strand
Strand 2	D	341	342	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	328	first strand
Strand 2	D	331	333	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	312	316	anti-parallel
Strand 3	E	345	347	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	18	first strand
Strand 2	E	39	42	parallel
Strand 3	E	74	80	parallel
Strand 4	E	99	104	parallel
Strand 5	E	137	139	parallel
Strand 6	E	174	176	parallel
Strand 7	E	195	199	parallel
Strand 8	E	246	248	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	321	first strand
Strand 2	E	341	342	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	326	328	first strand
Strand 2	E	331	333	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	11	first strand
Strand 2	F	312	316	anti-parallel
Strand 3	F	345	346	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	18	first strand
Strand 2	F	39	42	parallel
Strand 3	F	74	80	parallel
Strand 4	F	99	104	parallel
Strand 5	F	137	139	parallel
Strand 6	F	174	176	parallel
Strand 7	F	195	199	parallel
Strand 8	F	246	248	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	320	321	first strand
Strand 2	F	341	342	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	326	328	first strand
Strand 2	F	331	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CTY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CTY