Analysis of interatomic Contacts of Structural Units in PDB entry:
6CU5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CU5 entry

There are 2 chains in PDB entry 6CU5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 15	ARG 328
B	GLY 16	ARG 328

There are 28 helices in PDB entry 6CU5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	24	Right-handed alpha
Helix 2	AA2	A	24	37	Right-handed alpha
Helix 3	AA3	A	38	43	Right-handed alpha
Helix 4	AA4	A	55	65	Right-handed alpha
Helix 5	AA5	A	76	88	Right-handed alpha
Helix 6	AA6	A	100	104	Right-handed 310
Helix 7	AA7	A	107	111	Right-handed 310
Helix 8	AA8	A	131	142	Right-handed alpha
Helix 9	AA9	A	163	171	Right-handed alpha
Helix 10	AB1	A	172	176	Right-handed 310
Helix 11	AB2	A	182	184	Right-handed 310
Helix 12	AB3	A	185	192	Right-handed alpha
Helix 13	AB4	A	199	203	Right-handed 310
Helix 14	AB5	A	219	223	Right-handed 310
Helix 15	AB6	B	17	24	Right-handed alpha
Helix 16	AB7	B	24	37	Right-handed alpha
Helix 17	AB8	B	38	43	Right-handed alpha
Helix 18	AB9	B	55	65	Right-handed alpha
Helix 19	AC1	B	76	88	Right-handed alpha
Helix 20	AC2	B	100	104	Right-handed 310
Helix 21	AC3	B	107	111	Right-handed 310
Helix 22	AC4	B	131	142	Right-handed alpha
Helix 23	AC5	B	163	171	Right-handed alpha
Helix 24	AC6	B	172	176	Right-handed 310
Helix 25	AC7	B	182	184	Right-handed 310
Helix 26	AC8	B	185	192	Right-handed alpha
Helix 27	AC9	B	199	203	Right-handed 310
Helix 28	AD1	B	219	223	Right-handed 310

There are 8 sheets in PDB entry 6CU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	98	first strand
Strand 2	A	68	73	parallel
Strand 3	A	46	50	parallel
Strand 4	A	114	119	parallel
Strand 5	A	143	150	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	274	285	anti-parallel
Strand 3	A	238	251	anti-parallel
Strand 4	A	153	161	anti-parallel
Strand 5	A	208	214	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	274	285	anti-parallel
Strand 3	A	238	251	anti-parallel
Strand 4	A	259	262	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	233	first strand
Strand 2	A	290	299	anti-parallel
Strand 3	A	307	315	anti-parallel
Strand 4	A	321	327	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	98	first strand
Strand 2	B	68	73	parallel
Strand 3	B	46	50	parallel
Strand 4	B	114	119	parallel
Strand 5	B	143	150	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	274	285	anti-parallel
Strand 3	B	238	251	anti-parallel
Strand 4	B	153	161	anti-parallel
Strand 5	B	208	214	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	274	285	anti-parallel
Strand 3	B	238	251	anti-parallel
Strand 4	B	259	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	233	first strand
Strand 2	B	290	299	anti-parallel
Strand 3	B	307	315	anti-parallel
Strand 4	B	321	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CU5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CU5