Analysis of interatomic Contacts of Structural Units in PDB entry:
6CUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CUJ entry

There are 2 chains in PDB entry 6CUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 275GLN 426
B
 ILE 277ASP 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 6CUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
309 313Right-handed 310
Helix 2
AA2
B
309 313Right-handed 310
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There are 3 sheets in PDB entry 6CUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
287 294anti-parallel
Strand 3
A
298 305anti-parallel
Strand 4
B
299 305parallel
Strand 5
B
287 293anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 329first strand
Strand 2
A
334 345anti-parallel
Strand 3
A
350 356anti-parallel
Strand 4
A
365 373anti-parallel
Strand 5
A
376 381anti-parallel
Strand 6
A
389 394anti-parallel
Strand 7
A
400 407anti-parallel
Strand 8
A
415 424anti-parallel
Strand 9
A
316 329anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 329first strand
Strand 2
B
332 345anti-parallel
Strand 3
B
350 356anti-parallel
Strand 4
B
365 373anti-parallel
Strand 5
B
376 381anti-parallel
Strand 6
B
389 394anti-parallel
Strand 7
B
400 407anti-parallel
Strand 8
B
416 424anti-parallel
Strand 9
B
316 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il