Analysis of interatomic Contacts of Structural Units in PDB entry:
6CUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CUQ entry

There are 3 chains in PDB entry 6CUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PHE 113
B
 HIS -3PHE 113
C
 HIS -1PHE 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 6CUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 33Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
71 88Right-handed alpha
Helix 4
AA4
A
90 92Right-handed 310
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
B
13 33Right-handed alpha
Helix 7
AA7
B
35 38Right-handed 310
Helix 8
AA8
B
71 88Right-handed alpha
Helix 9
AA9
B
90 92Right-handed 310
Helix 10
AB1
B
102 104Right-handed 310
Helix 11
AB2
C
13 33Right-handed alpha
Helix 12
AB3
C
35 38Right-handed 310
Helix 13
AB4
C
71 88Right-handed alpha
Helix 14
AB5
C
90 92Right-handed 310
Helix 15
AB6
C
102 104Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 6CUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
106 108anti-parallel
Strand 3
A
94 100anti-parallel
Strand 4
A
58 64parallel
Strand 5
A
3 8anti-parallel
Strand 6
A
40 45parallel
Strand 7
C
47 50anti-parallel
Strand 8
C
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
47 50anti-parallel
Strand 3
B
40 45anti-parallel
Strand 4
B
3 8parallel
Strand 5
B
58 64anti-parallel
Strand 6
B
94 100parallel
Strand 7
C
106 108anti-parallel
Strand 8
C
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
106 108anti-parallel
Strand 3
C
94 100anti-parallel
Strand 4
C
58 64parallel
Strand 5
C
3 8anti-parallel
Strand 6
C
40 45parallel
Strand 7
B
47 50anti-parallel
Strand 8
B
53 54anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il