Analysis of interatomic Contacts of Structural Units in PDB entry:
6CVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CVA entry

There is 1 chain in PDB entry 6CVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 44GLY 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6CVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 61Right-handed alpha
Helix 2
AA2
A
61 68Right-handed alpha
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
101 111Right-handed alpha
Helix 5
AA5
A
135 139Right-handed 310
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
179 181Right-handed 310
Helix 9
AA9
A
196 203Right-handed 310
Helix 10
AB1
A
213 220Right-handed alpha
Helix 11
AB2
A
223 227Right-handed 310
Helix 12
AB3
A
245 247Right-handed 310
Helix 13
AB4
A
249 260Right-handed alpha
Helix 14
AB5
A
261 272Right-handed alpha
Helix 15
AB6
A
278 282Right-handed 310
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There are 3 sheets in PDB entry 6CVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
45 50parallel
Strand 3
A
95 100parallel
Strand 4
A
238 243anti-parallel
Strand 5
A
115 120anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
144 148parallel
Strand 3
A
209 212parallel
Strand 4
A
127 130anti-parallel
Strand 5
A
229 230anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
183 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il