Analysis of interatomic Contacts of Structural Units in PDB entry:
6CVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CVD entry

There are 2 chains in PDB entry 6CVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 195GLU 496
B
 GLY 195ASP 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6CVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
196 203Right-handed alpha
Helix 2
AA2
A
203 208Right-handed alpha
Helix 3
AA3
A
209 212Right-handed 310
Helix 4
AA4
A
213 219Right-handed alpha
Helix 5
AA5
A
224 238Right-handed alpha
Helix 6
AA6
A
241 259Right-handed alpha
Helix 7
AA7
A
263 265Right-handed 310
Helix 8
AA8
A
266 281Right-handed alpha
Helix 9
AA9
A
305 320Right-handed alpha
Helix 10
AB1
A
333 348Right-handed alpha
Helix 11
AB2
A
359 374Right-handed alpha
Helix 12
AB3
A
389 406Right-handed alpha
Helix 13
AB4
A
424 438Right-handed alpha
Helix 14
AB5
A
455 465Right-handed alpha
Helix 15
AB6
A
476 478Right-handed 310
Helix 16
AB7
A
484 494Right-handed alpha
Helix 17
AB8
B
196 203Right-handed alpha
Helix 18
AB9
B
203 208Right-handed alpha
Helix 19
AC1
B
210 213Right-handed 310
Helix 20
AC2
B
214 219Right-handed alpha
Helix 21
AC3
B
224 238Right-handed alpha
Helix 22
AC4
B
241 260Right-handed alpha
Helix 23
AC5
B
263 265Right-handed 310
Helix 24
AC6
B
266 281Right-handed alpha
Helix 25
AC7
B
305 320Right-handed alpha
Helix 26
AC8
B
333 348Right-handed alpha
Helix 27
AC9
B
359 374Right-handed alpha
Helix 28
AD1
B
389 408Right-handed alpha
Helix 29
AD2
B
424 438Right-handed alpha
Helix 30
AD3
B
455 465Right-handed alpha
Helix 31
AD4
B
476 478Right-handed 310
Helix 32
AD5
B
484 493Right-handed alpha
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There are 2 sheets in PDB entry 6CVD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
324 327parallel
Strand 3
A
378 381parallel
Strand 4
A
294 299parallel
Strand 5
A
414 420parallel
Strand 6
A
442 446parallel
Strand 7
A
468 472parallel
Strand 8
A
480 482anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
324 327parallel
Strand 3
B
378 381parallel
Strand 4
B
294 299parallel
Strand 5
B
414 420parallel
Strand 6
B
442 446parallel
Strand 7
B
468 472parallel
Strand 8
B
480 482anti-parallel
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