Analysis of interatomic Contacts of Structural Units in PDB entry:
6CVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CVJ entry

There are 4 chains in PDB entry 6CVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 439
B
 MET 1ASP 441
C
 MET 1GLN 436
D
 VAL 256LYS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6CVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
71 80Right-handed alpha
Helix 4
AA4
A
102 108Right-handed alpha
Helix 5
AA5
A
110 128Right-handed alpha
Helix 6
AA6
A
144 161Right-handed alpha
Helix 7
AA7
A
182 195Right-handed alpha
Helix 8
AA8
A
206 216Right-handed alpha
Helix 9
AA9
A
223 244Right-handed alpha
Helix 10
AB1
A
251 260Right-handed alpha
Helix 11
AB2
A
279 284Right-handed 310
Helix 12
AB3
A
287 295Right-handed alpha
Helix 13
AB4
A
296 301Right-handed 310
Helix 14
AB5
A
306 310Right-handed 310
Helix 15
AB6
A
324 338Right-handed alpha
Helix 16
AB7
A
383 400Right-handed alpha
Helix 17
AB8
A
404 410Right-handed alpha
Helix 18
AB9
A
415 436Right-handed alpha
Helix 19
AC1
B
10 28Right-handed alpha
Helix 20
AC2
B
41 48Right-handed alpha
Helix 21
AC3
B
49 51Right-handed 310
Helix 22
AC4
B
71 81Right-handed alpha
Helix 23
AC5
B
88 90Right-handed 310
Helix 24
AC6
B
102 109Right-handed alpha
Helix 25
AC7
B
109 128Right-handed alpha
Helix 26
AC8
B
144 161Right-handed alpha
Helix 27
AC9
B
182 195Right-handed alpha
Helix 28
AD1
B
206 216Right-handed alpha
Helix 29
AD2
B
223 239Right-handed alpha
Helix 30
AD3
B
251 260Right-handed alpha
Helix 31
AD4
B
279 284Right-handed 310
Helix 32
AD5
B
287 296Right-handed alpha
Helix 33
AD6
B
297 301Right-handed 310
Helix 34
AD7
B
306 310Right-handed 310
Helix 35
AD8
B
324 339Right-handed alpha
Helix 36
AD9
B
340 343Right-handed 310
Helix 37
AE1
B
383 401Right-handed alpha
Helix 38
AE2
B
405 410Right-handed alpha
Helix 39
AE3
B
414 436Right-handed alpha
Helix 40
AE4
C
10 28Right-handed alpha
Helix 41
AE5
C
40 48Right-handed alpha
Helix 42
AE6
C
49 51Right-handed 310
Helix 43
AE7
C
71 81Right-handed alpha
Helix 44
AE8
C
88 90Right-handed 310
Helix 45
AE9
C
102 109Right-handed alpha
Helix 46
AF1
C
109 128Right-handed alpha
Helix 47
AF2
C
144 161Right-handed alpha
Helix 48
AF3
C
182 198Right-handed alpha
Helix 49
AF4
C
205 216Right-handed alpha
Helix 50
AF5
C
223 239Right-handed alpha
Helix 51
AF6
C
240 243Right-handed 310
Helix 52
AF7
C
251 260Right-handed alpha
Helix 53
AF8
C
279 284Right-handed 310
Helix 54
AF9
C
287 296Right-handed alpha
Helix 55
AG1
C
297 301Right-handed 310
Helix 56
AG2
C
306 310Right-handed 310
Helix 57
AG3
C
324 339Right-handed alpha
Helix 58
AG4
C
340 343Right-handed 310
Helix 59
AG5
C
384 400Right-handed alpha
Helix 60
AG6
C
405 410Right-handed alpha
Helix 61
AG7
C
414 435Right-handed alpha
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There are 7 sheets in PDB entry 6CVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
60 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 355parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
2 9parallel
Strand 4
B
131 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
3 9parallel
Strand 4
C
132 140parallel
Strand 5
C
165 171parallel
Strand 6
C
200 204parallel
Strand 7
C
267 273parallel
Strand 8
C
374 381anti-parallel
Strand 9
C
312 320anti-parallel
Strand 10
C
351 356parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
60 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il