Analysis of interatomic Contacts of Structural Units in PDB entry:
6CVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CVK entry

There are 4 chains in PDB entry 6CVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 3VAL 251
A
 ALA 2HIS 259
C
 SER 1PRO 154
D
 SER 1GLU 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6CVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
81 85Right-handed 310
Helix 2
AA2
B
212 216Right-handed 310
Helix 3
AA3
A
81 85Right-handed 310
Helix 4
AA4
A
212 216Right-handed 310
Helix 5
AA5
C
2 10Right-handed alpha
Helix 6
AA6
C
16 20Right-handed 310
Helix 7
AA7
C
22 28Right-handed alpha
Helix 8
AA8
C
29 34Right-handed 310
Helix 9
AA9
C
36 54Right-handed alpha
Helix 10
AB1
C
55 58Right-handed 310
Helix 11
AB2
C
59 85Right-handed alpha
Helix 12
AB3
C
88 121Right-handed alpha
Helix 13
AB4
C
121 138Right-handed alpha
Helix 14
AB5
C
139 143Right-handed 310
Helix 15
AB6
D
2 9Right-handed alpha
Helix 16
AB7
D
16 20Right-handed 310
Helix 17
AB8
D
22 28Right-handed alpha
Helix 18
AB9
D
29 34Right-handed 310
Helix 19
AC1
D
36 54Right-handed alpha
Helix 20
AC2
D
59 86Right-handed alpha
Helix 21
AC3
D
88 121Right-handed alpha
Helix 22
AC4
D
121 138Right-handed alpha
Helix 23
AC5
D
139 143Right-handed 310
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There are 12 sheets in PDB entry 6CVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
21 27anti-parallel
Strand 3
B
72 77anti-parallel
Strand 4
B
64 69anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
105 110parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
35 40anti-parallel
Strand 5
B
47 51anti-parallel
Strand 6
B
55 56anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
105 110parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
99 101anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
203 208anti-parallel
Strand 4
B
195 199anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
243 247parallel
Strand 3
B
217 224anti-parallel
Strand 4
B
161 167anti-parallel
Strand 5
B
173 179anti-parallel
Strand 6
B
185 187anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
243 247parallel
Strand 3
B
217 224anti-parallel
Strand 4
B
236 239anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
64 69anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
105 110parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
35 40anti-parallel
Strand 5
A
47 51anti-parallel
Strand 6
A
55 56anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
105 110parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
99 101anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
203 208anti-parallel
Strand 4
A
195 199anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
243 247parallel
Strand 3
A
217 224anti-parallel
Strand 4
A
161 167anti-parallel
Strand 5
A
173 179anti-parallel
Strand 6
A
185 187anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
243 247parallel
Strand 3
A
217 224anti-parallel
Strand 4
A
236 239anti-parallel
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