Analysis of interatomic Contacts of Structural Units in PDB entry:
6CVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CVL entry

There are 3 chains in PDB entry 6CVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 HIS 0VAL 343
A
 MET 1THR 215
B
 MET 1THR 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6CVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
43 53Right-handed alpha
Helix 2
AA2
C
73 82Right-handed alpha
Helix 3
AA3
C
98 110Right-handed alpha
Helix 4
AA4
C
113 128Right-handed alpha
Helix 5
AA5
C
130 134Right-handed 310
Helix 6
AA6
C
137 141Right-handed 310
Helix 7
AA7
C
142 157Right-handed alpha
Helix 8
AA8
C
172 191Right-handed alpha
Helix 9
AA9
C
200 208Right-handed alpha
Helix 10
AB1
C
225 230Right-handed alpha
Helix 11
AB2
C
234 245Right-handed alpha
Helix 12
AB3
C
250 257Right-handed alpha
Helix 13
AB4
C
282 291Right-handed alpha
Helix 14
AB5
C
319 333Right-handed alpha
Helix 15
AB6
A
2 41Right-handed alpha
Helix 16
AB7
A
49 66Right-handed alpha
Helix 17
AB8
A
67 84Right-handed alpha
Helix 18
AB9
A
87 114Right-handed alpha
Helix 19
AC1
A
116 127Right-handed alpha
Helix 20
AC2
A
129 137Right-handed alpha
Helix 21
AC3
A
137 142Right-handed alpha
Helix 22
AC4
A
142 165Right-handed alpha
Helix 23
AC5
A
170 179Right-handed alpha
Helix 24
AC6
A
185 214Right-handed alpha
Helix 25
AC7
B
2 41Right-handed alpha
Helix 26
AC8
B
49 66Right-handed alpha
Helix 27
AC9
B
67 84Right-handed alpha
Helix 28
AD1
B
88 114Right-handed alpha
Helix 29
AD2
B
116 127Right-handed alpha
Helix 30
AD3
B
129 137Right-handed alpha
Helix 31
AD4
B
137 142Right-handed alpha
Helix 32
AD5
B
142 165Right-handed alpha
Helix 33
AD6
B
170 179Right-handed alpha
Helix 34
AD7
B
185 214Right-handed alpha
Helix 35
AD8
D
43 53Right-handed alpha
Helix 36
AD9
D
73 82Right-handed alpha
Helix 37
AE1
D
98 110Right-handed alpha
Helix 38
AE2
D
113 128Right-handed alpha
Helix 39
AE3
D
130 134Right-handed 310
Helix 40
AE4
D
137 141Right-handed 310
Helix 41
AE5
D
142 157Right-handed alpha
Helix 42
AE6
D
172 190Right-handed alpha
Helix 43
AE7
D
200 208Right-handed alpha
Helix 44
AE8
D
225 230Right-handed alpha
Helix 45
AE9
D
234 245Right-handed alpha
Helix 46
AF1
D
250 257Right-handed alpha
Helix 47
AF2
D
282 291Right-handed alpha
Helix 48
AF3
D
319 333Right-handed alpha
Helix 49
AF4
E
43 57Right-handed alpha
Helix 50
AF5
E
70 79Right-handed alpha
Helix 51
AF6
E
88 98Right-handed alpha
Helix 52
AF7
E
123 127Right-handed 310
Helix 53
AF8
E
138 152Right-handed alpha
Helix 54
AF9
E
166 170Right-handed 310
Helix 55
AG1
E
183 185Right-handed 310
Helix 56
AG2
E
186 191Right-handed alpha
Helix 57
AG3
E
203 209Right-handed alpha
Helix 58
AG4
E
236 239Right-handed 310
Helix 59
AG5
E
240 251Right-handed alpha
Helix 60
AG6
E
252 259Right-handed alpha
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There are 7 sheets in PDB entry 6CVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 28first strand
Strand 2
C
2 12anti-parallel
Strand 3
C
59 64anti-parallel
Strand 4
C
67 68anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
C
161 165parallel
Strand 3
C
193 197parallel
Strand 4
C
33 38parallel
Strand 5
C
210 215parallel
Strand 6
C
218 224anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 343first strand
Strand 2
C
266 277anti-parallel
Strand 3
C
307 317anti-parallel
Strand 4
C
293 304anti-parallel
Strand 5
D
293 304anti-parallel
Strand 6
D
307 317anti-parallel
Strand 7
D
267 277anti-parallel
Strand 8
D
335 342anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 28first strand
Strand 2
D
2 12anti-parallel
Strand 3
D
59 64anti-parallel
Strand 4
D
67 68anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 87first strand
Strand 2
D
161 165parallel
Strand 3
D
193 197parallel
Strand 4
D
33 38parallel
Strand 5
D
210 215parallel
Strand 6
D
218 224anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 36first strand
Strand 2
E
83 84parallel
Strand 3
E
232 234anti-parallel
Strand 4
E
103 105anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
178 182first strand
Strand 2
E
132 136parallel
Strand 3
E
196 202parallel
Strand 4
E
114 117anti-parallel
Strand 5
E
219 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il