Analysis of interatomic Contacts of Structural Units in PDB entry:
6CVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CVS entry

There are 6 chains in PDB entry 6CVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 161TRP 340
B
 HIS 163TRP 340
D
 G 1 C 10
E
 G 1 C 10
G
 G 1 C 10
H
 G 1 C 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6CVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 168Right-handed 310
Helix 2
AA2
A
169 175Right-handed alpha
Helix 3
AA3
A
212 216Right-handed 310
Helix 4
AA4
A
217 219Right-handed 310
Helix 5
AA5
A
220 240Right-handed alpha
Helix 6
AA6
A
241 243Right-handed 310
Helix 7
AA7
A
275 284Right-handed alpha
Helix 8
AA8
A
290 301Right-handed alpha
Helix 9
AA9
A
308 313Right-handed alpha
Helix 10
AB1
A
328 337Right-handed alpha
Helix 11
AB2
A
338 340Right-handed 310
Helix 12
AB3
B
165 168Right-handed 310
Helix 13
AB4
B
169 176Right-handed alpha
Helix 14
AB5
B
177 179Right-handed 310
Helix 15
AB6
B
212 216Right-handed 310
Helix 16
AB7
B
217 219Right-handed 310
Helix 17
AB8
B
220 239Right-handed alpha
Helix 18
AB9
B
275 284Right-handed alpha
Helix 19
AC1
B
290 301Right-handed alpha
Helix 20
AC2
B
308 313Right-handed alpha
Helix 21
AC3
B
328 336Right-handed alpha
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There are 3 sheets in PDB entry 6CVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
188 192anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
261 265anti-parallel
Strand 5
A
246 251anti-parallel
Strand 6
A
287 289anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
325 326anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 184first strand
Strand 2
B
188 192anti-parallel
Strand 3
B
201 206anti-parallel
Strand 4
B
261 265anti-parallel
Strand 5
B
246 251anti-parallel
Strand 6
B
287 289anti-parallel
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