Analysis of interatomic Contacts of Structural Units in PDB entry:
6CW1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CW1 entry

There are 2 chains in PDB entry 6CW1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 279	ALA 673
B	GLY 278	GLY 674

There are 12 helices in PDB entry 6CW1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	428	432	Right-handed 310
Helix 2	AA2	A	458	466	Right-handed alpha
Helix 3	AA3	A	483	487	Right-handed 310
Helix 4	AA4	A	539	543	Right-handed 310
Helix 5	AA5	A	638	643	Right-handed alpha
Helix 6	AA6	A	662	670	Right-handed alpha
Helix 7	AA7	B	428	432	Right-handed 310
Helix 8	AA8	B	458	466	Right-handed alpha
Helix 9	AA9	B	483	487	Right-handed 310
Helix 10	AB1	B	539	543	Right-handed 310
Helix 11	AB2	B	638	643	Right-handed alpha
Helix 12	AB3	B	662	670	Right-handed alpha

There are 12 sheets in PDB entry 6CW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	287	first strand
Strand 2	A	442	452	anti-parallel
Strand 3	A	456	457	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	287	first strand
Strand 2	A	442	452	anti-parallel
Strand 3	A	305	314	anti-parallel
Strand 4	A	368	375	anti-parallel
Strand 5	A	378	398	anti-parallel
Strand 6	A	402	407	anti-parallel
Strand 7	B	350	357	anti-parallel
Strand 8	B	339	346	anti-parallel
Strand 9	B	329	336	anti-parallel
Strand 10	B	319	324	anti-parallel
Strand 11	B	420	423	anti-parallel
Strand 12	B	291	295	anti-parallel
Strand 13	B	470	473	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	473	first strand
Strand 2	A	291	295	anti-parallel
Strand 3	A	420	423	anti-parallel
Strand 4	A	319	323	anti-parallel
Strand 5	A	329	336	anti-parallel
Strand 6	A	339	346	anti-parallel
Strand 7	A	350	357	anti-parallel
Strand 8	B	402	407	anti-parallel
Strand 9	B	378	398	anti-parallel
Strand 10	B	368	375	anti-parallel
Strand 11	B	305	314	anti-parallel
Strand 12	B	442	452	anti-parallel
Strand 13	B	283	287	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	473	first strand
Strand 2	A	291	295	anti-parallel
Strand 3	A	420	423	anti-parallel
Strand 4	A	319	323	anti-parallel
Strand 5	A	329	336	anti-parallel
Strand 6	A	339	346	anti-parallel
Strand 7	A	350	357	anti-parallel
Strand 8	B	402	407	anti-parallel
Strand 9	B	378	398	anti-parallel
Strand 10	B	368	375	anti-parallel
Strand 11	B	305	314	anti-parallel
Strand 12	B	442	452	anti-parallel
Strand 13	B	456	457	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	415	417	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	649	656	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	583	590	anti-parallel
Strand 5	A	593	598	anti-parallel
Strand 6	A	601	606	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	649	656	anti-parallel
Strand 3	A	659	661	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	500	first strand
Strand 2	A	620	622	anti-parallel
Strand 3	A	522	528	anti-parallel
Strand 4	A	547	553	anti-parallel
Strand 5	A	556	562	anti-parallel
Strand 6	A	567	571	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	415	417	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	649	656	anti-parallel
Strand 3	B	508	516	anti-parallel
Strand 4	B	583	590	anti-parallel
Strand 5	B	593	598	anti-parallel
Strand 6	B	601	606	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	649	656	anti-parallel
Strand 3	B	659	661	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	500	first strand
Strand 2	B	620	622	anti-parallel
Strand 3	B	522	528	anti-parallel
Strand 4	B	547	553	anti-parallel
Strand 5	B	556	562	anti-parallel
Strand 6	B	567	571	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CW1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CW1