Analysis of interatomic Contacts of Structural Units in PDB entry:
6CWD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CWD entry

There are 8 chains in PDB entry 6CWD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 3	VAL 251
D	PRO 5	GLU 145
G	GLU 3	VAL 251
H	PRO 5	GLU 145
A	GLU 3	VAL 251
C	LYS 7	GLU 145
E	GLU 3	SER 249
F	LYS 7	PRO 25

There are 40 helices in PDB entry 6CWD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	53	55	Right-handed 310
Helix 2	AA2	B	81	85	Right-handed 310
Helix 3	AA3	B	212	216	Right-handed 310
Helix 4	AA4	D	6	10	Right-handed 310
Helix 5	AA5	D	12	18	Right-handed alpha
Helix 6	AA6	D	20	24	Right-handed 310
Helix 7	AA7	D	26	41	Right-handed alpha
Helix 8	AA8	D	49	72	Right-handed alpha
Helix 9	AA9	D	95	110	Right-handed alpha
Helix 10	AB1	D	111	128	Right-handed alpha
Helix 11	AB2	G	81	85	Right-handed 310
Helix 12	AB3	G	212	216	Right-handed 310
Helix 13	AB4	H	12	17	Right-handed alpha
Helix 14	AB5	H	26	36	Right-handed alpha
Helix 15	AB6	H	49	72	Right-handed alpha
Helix 16	AB7	H	73	75	Right-handed 310
Helix 17	AB8	H	92	94	Right-handed 310
Helix 18	AB9	H	95	110	Right-handed alpha
Helix 19	AC1	H	111	127	Right-handed alpha
Helix 20	AC2	H	129	133	Right-handed 310
Helix 21	AC3	A	189	192	Right-handed 310
Helix 22	AC4	A	212	216	Right-handed 310
Helix 23	AC5	C	12	19	Right-handed alpha
Helix 24	AC6	C	26	38	Right-handed alpha
Helix 25	AC7	C	49	71	Right-handed alpha
Helix 26	AC8	C	72	75	Right-handed 310
Helix 27	AC9	C	92	94	Right-handed 310
Helix 28	AD1	C	95	110	Right-handed alpha
Helix 29	AD2	C	111	128	Right-handed alpha
Helix 30	AD3	E	81	85	Right-handed 310
Helix 31	AD4	E	212	216	Right-handed 310
Helix 32	AD5	F	14	19	Right-handed 310
Helix 33	AD6	F	20	24	Right-handed 310
Helix 34	AD7	F	26	35	Right-handed alpha
Helix 35	AD8	F	37	42	Right-handed alpha
Helix 36	AD9	F	49	71	Right-handed alpha
Helix 37	AE1	F	72	75	Right-handed 310
Helix 38	AE2	F	92	94	Right-handed 310
Helix 39	AE3	F	95	110	Right-handed alpha
Helix 40	AE4	F	111	127	Right-handed alpha

There are 24 sheets in PDB entry 6CWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	21	26	anti-parallel
Strand 3	B	72	77	anti-parallel
Strand 4	B	64	69	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	105	110	parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	47	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	105	110	parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	146	153	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	195	199	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	243	247	parallel
Strand 3	B	217	224	anti-parallel
Strand 4	B	161	167	anti-parallel
Strand 5	B	173	179	anti-parallel
Strand 6	B	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	243	247	parallel
Strand 3	B	217	224	anti-parallel
Strand 4	B	236	239	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	9	first strand
Strand 2	G	21	27	anti-parallel
Strand 3	G	72	77	anti-parallel
Strand 4	G	64	69	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	16	first strand
Strand 2	G	105	110	parallel
Strand 3	G	86	93	anti-parallel
Strand 4	G	35	40	anti-parallel
Strand 5	G	46	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	16	first strand
Strand 2	G	105	110	parallel
Strand 3	G	86	93	anti-parallel
Strand 4	G	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	135	first strand
Strand 2	G	146	153	anti-parallel
Strand 3	G	203	208	anti-parallel
Strand 4	G	195	199	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	140	first strand
Strand 2	G	243	247	parallel
Strand 3	G	217	224	anti-parallel
Strand 4	G	161	167	anti-parallel
Strand 5	G	173	179	anti-parallel
Strand 6	G	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	140	first strand
Strand 2	G	243	247	parallel
Strand 3	G	217	224	anti-parallel
Strand 4	G	236	239	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	21	26	anti-parallel
Strand 3	A	72	77	anti-parallel
Strand 4	A	64	68	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	105	110	parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	35	40	anti-parallel
Strand 5	A	47	51	anti-parallel
Strand 6	A	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	105	110	parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	135	first strand
Strand 2	A	147	153	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	195	199	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	244	247	parallel
Strand 3	A	217	224	anti-parallel
Strand 4	A	161	167	anti-parallel
Strand 5	A	173	179	anti-parallel
Strand 6	A	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	244	247	parallel
Strand 3	A	217	224	anti-parallel
Strand 4	A	236	239	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	9	first strand
Strand 2	E	21	26	anti-parallel
Strand 3	E	72	77	anti-parallel
Strand 4	E	64	68	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	105	110	parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	35	40	anti-parallel
Strand 5	E	47	50	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	105	110	parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	146	152	anti-parallel
Strand 3	E	203	208	anti-parallel
Strand 4	E	195	199	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	244	247	parallel
Strand 3	E	217	224	anti-parallel
Strand 4	E	161	167	anti-parallel
Strand 5	E	173	179	anti-parallel
Strand 6	E	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	244	247	parallel
Strand 3	E	217	224	anti-parallel
Strand 4	E	236	239	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CWD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CWD