Analysis of interatomic Contacts of Structural Units in PDB entry:
6CWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CWJ entry

There are 4 chains in PDB entry 6CWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	VAL 362
B	HIS 0	VAL 362
C	HIS 0	VAL 362
D	HIS 0	SER 252

There are 52 helices in PDB entry 6CWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	26	Right-handed alpha
Helix 2	AA2	A	30	32	Right-handed 310
Helix 3	AA3	A	50	68	Right-handed alpha
Helix 4	AA4	A	70	78	Right-handed alpha
Helix 5	AA5	A	123	127	Right-handed 310
Helix 6	AA6	A	129	147	Right-handed alpha
Helix 7	AA7	A	151	153	Right-handed 310
Helix 8	AA8	A	166	176	Right-handed alpha
Helix 9	AA9	A	184	204	Right-handed alpha
Helix 10	AB1	A	208	212	Right-handed 310
Helix 11	AB2	A	266	277	Right-handed alpha
Helix 12	AB3	A	281	286	Right-handed 310
Helix 13	AB4	A	317	335	Right-handed alpha
Helix 14	AB5	B	17	26	Right-handed alpha
Helix 15	AB6	B	30	32	Right-handed 310
Helix 16	AB7	B	50	68	Right-handed alpha
Helix 17	AB8	B	70	78	Right-handed alpha
Helix 18	AB9	B	123	127	Right-handed 310
Helix 19	AC1	B	129	147	Right-handed alpha
Helix 20	AC2	B	151	153	Right-handed 310
Helix 21	AC3	B	166	176	Right-handed alpha
Helix 22	AC4	B	184	204	Right-handed alpha
Helix 23	AC5	B	208	212	Right-handed 310
Helix 24	AC6	B	266	277	Right-handed alpha
Helix 25	AC7	B	281	286	Right-handed 310
Helix 26	AC8	B	317	335	Right-handed alpha
Helix 27	AC9	C	17	26	Right-handed alpha
Helix 28	AD1	C	30	32	Right-handed 310
Helix 29	AD2	C	50	68	Right-handed alpha
Helix 30	AD3	C	70	78	Right-handed alpha
Helix 31	AD4	C	123	127	Right-handed 310
Helix 32	AD5	C	129	147	Right-handed alpha
Helix 33	AD6	C	151	153	Right-handed 310
Helix 34	AD7	C	166	176	Right-handed alpha
Helix 35	AD8	C	184	204	Right-handed alpha
Helix 36	AD9	C	208	212	Right-handed 310
Helix 37	AE1	C	266	277	Right-handed alpha
Helix 38	AE2	C	281	286	Right-handed 310
Helix 39	AE3	C	317	335	Right-handed alpha
Helix 40	AE4	D	17	26	Right-handed alpha
Helix 41	AE5	D	30	32	Right-handed 310
Helix 42	AE6	D	50	68	Right-handed alpha
Helix 43	AE7	D	70	78	Right-handed alpha
Helix 44	AE8	D	123	127	Right-handed 310
Helix 45	AE9	D	129	147	Right-handed alpha
Helix 46	AF1	D	151	153	Right-handed 310
Helix 47	AF2	D	166	176	Right-handed alpha
Helix 48	AF3	D	184	204	Right-handed alpha
Helix 49	AF4	D	208	212	Right-handed 310
Helix 50	AF5	D	266	277	Right-handed alpha
Helix 51	AF6	D	281	286	Right-handed 310
Helix 52	AF7	D	317	335	Right-handed alpha

There are 16 sheets in PDB entry 6CWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	10	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	34	41	anti-parallel
Strand 4	A	79	84	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	118	first strand
Strand 2	A	240	247	anti-parallel
Strand 3	A	155	162	anti-parallel
Strand 4	A	228	232	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	261	first strand
Strand 2	A	354	361	anti-parallel
Strand 3	A	288	295	anti-parallel
Strand 4	A	340	343	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	306	307	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	10	first strand
Strand 2	B	93	102	anti-parallel
Strand 3	B	34	41	anti-parallel
Strand 4	B	79	84	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	118	first strand
Strand 2	B	240	247	anti-parallel
Strand 3	B	155	162	anti-parallel
Strand 4	B	228	232	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	261	first strand
Strand 2	B	354	361	anti-parallel
Strand 3	B	288	295	anti-parallel
Strand 4	B	340	343	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	306	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1	10	first strand
Strand 2	C	93	102	anti-parallel
Strand 3	C	34	41	anti-parallel
Strand 4	C	79	84	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	118	first strand
Strand 2	C	240	247	anti-parallel
Strand 3	C	155	162	anti-parallel
Strand 4	C	228	232	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	261	first strand
Strand 2	C	354	361	anti-parallel
Strand 3	C	288	295	anti-parallel
Strand 4	C	340	343	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	303	first strand
Strand 2	C	306	307	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	10	first strand
Strand 2	D	93	100	anti-parallel
Strand 3	D	34	41	anti-parallel
Strand 4	D	79	84	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	118	first strand
Strand 2	D	240	247	anti-parallel
Strand 3	D	155	162	anti-parallel
Strand 4	D	228	232	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	261	first strand
Strand 2	D	354	361	anti-parallel
Strand 3	D	288	295	anti-parallel
Strand 4	D	340	343	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	303	first strand
Strand 2	D	306	307	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CWJ