Analysis of interatomic Contacts of Structural Units in PDB entry:
6CWY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CWY entry

There are 2 chains in PDB entry 6CWY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 17	LYS 346
D	LEU 3	GLY 548

There are 36 helices in PDB entry 6CWY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	17	29	Right-handed alpha
Helix 2	AA2	C	29	36	Right-handed alpha
Helix 3	AA3	C	45	59	Right-handed alpha
Helix 4	AA4	C	90	95	Right-handed alpha
Helix 5	AA5	C	95	103	Right-handed alpha
Helix 6	AA6	C	114	118	Right-handed 310
Helix 7	AA7	C	119	124	Right-handed alpha
Helix 8	AA8	C	135	149	Right-handed alpha
Helix 9	AA9	C	215	221	Right-handed alpha
Helix 10	AB1	C	226	236	Right-handed alpha
Helix 11	AB2	C	238	254	Right-handed alpha
Helix 12	AB3	C	261	280	Right-handed alpha
Helix 13	AB4	C	283	287	Right-handed 310
Helix 14	AB5	C	288	294	Right-handed 310
Helix 15	AB6	C	299	320	Right-handed alpha
Helix 16	AB7	D	8	18	Right-handed alpha
Helix 17	AB8	D	28	40	Right-handed alpha
Helix 18	AB9	D	71	84	Right-handed alpha
Helix 19	AC1	D	102	107	Right-handed alpha
Helix 20	AC2	D	118	133	Right-handed alpha
Helix 21	AC3	D	171	177	Right-handed alpha
Helix 22	AC4	D	182	198	Right-handed alpha
Helix 23	AC5	D	201	205	Right-handed 310
Helix 24	AC6	D	239	247	Right-handed alpha
Helix 25	AC7	D	250	259	Right-handed alpha
Helix 26	AC8	D	260	267	Right-handed alpha
Helix 27	AC9	D	268	273	Right-handed 310
Helix 28	AD1	D	283	288	Right-handed alpha
Helix 29	AD2	D	314	332	Right-handed alpha
Helix 30	AD3	D	348	366	Right-handed alpha
Helix 31	AD4	D	372	379	Right-handed alpha
Helix 32	AD5	D	387	407	Right-handed alpha
Helix 33	AD6	D	409	412	Right-handed 310
Helix 34	AD7	D	460	467	Right-handed alpha
Helix 35	AD8	D	498	502	Right-handed 310
Helix 36	AD9	D	505	510	Right-handed 310

There are 4 sheets in PDB entry 6CWY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	111	first strand
Strand 2	C	62	66	parallel
Strand 3	C	38	42	parallel
Strand 4	C	128	132	parallel
Strand 5	C	152	159	parallel
Strand 6	C	162	168	anti-parallel
Strand 7	C	328	332	anti-parallel
Strand 8	C	337	341	anti-parallel
Strand 9	D	427	433	anti-parallel
Strand 10	D	414	418	anti-parallel
Strand 11	D	145	151	anti-parallel
Strand 12	D	136	142	anti-parallel
Strand 13	D	111	114	parallel
Strand 14	D	19	23	parallel
Strand 15	D	43	47	parallel
Strand 16	D	88	91	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	176	first strand
Strand 2	C	207	212	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	170	first strand
Strand 2	D	383	385	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	479	482	anti-parallel
Strand 3	D	516	521	anti-parallel
Strand 4	D	526	534	anti-parallel
Strand 5	D	449	454	parallel
Strand 6	D	544	546	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CWY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CWY