Analysis of interatomic Contacts of Structural Units in PDB entry:
6CXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CXD entry

There is 1 chain in PDB entry 6CXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6CXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
40 55Right-handed alpha
Helix 3
AA3
A
68 80Right-handed alpha
Helix 4
AA4
A
94 117Right-handed alpha
Helix 5
AA5
A
118 122Right-handed 310
Helix 6
AA6
A
123 139Right-handed alpha
Helix 7
AA7
A
150 156Right-handed alpha
Helix 8
AA8
A
158 165Right-handed alpha
Helix 9
AA9
A
214 219Right-handed 310
Helix 10
AB1
A
220 236Right-handed alpha
Helix 11
AB2
A
254 258Right-handed 310
Helix 12
AB3
A
280 294Right-handed alpha
Helix 13
AB4
A
325 339Right-handed alpha
Helix 14
AB5
A
349 355Right-handed 310
Helix 15
AB6
A
374 384Right-handed alpha
Helix 16
AB7
A
418 430Right-handed alpha
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There are 4 sheets in PDB entry 6CXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
32 35anti-parallel
Strand 3
A
6 11parallel
Strand 4
A
59 62parallel
Strand 5
A
87 89parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 149first strand
Strand 2
A
173 179anti-parallel
Strand 3
A
241 251anti-parallel
Strand 4
A
189 201parallel
Strand 5
A
299 304parallel
Strand 6
A
393 397parallel
Strand 7
A
319 322anti-parallel
Strand 8
A
343 345parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
271 273anti-parallel
Strand 3
A
363 364parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
413 414anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il