Analysis of interatomic Contacts of Structural Units in PDB entry:
6CXO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CXO entry

There are 2 chains in PDB entry 6CXO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 16	GLN 526
B	PRO 16	GLN 526

There are 27 helices in PDB entry 6CXO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	96	Right-handed 310
Helix 2	AA2	A	128	134	Right-handed alpha
Helix 3	AA3	A	195	207	Right-handed alpha
Helix 4	AA4	A	208	212	Right-handed 310
Helix 5	AA5	A	253	263	Right-handed alpha
Helix 6	AA6	A	294	303	Right-handed alpha
Helix 7	AA7	A	309	321	Right-handed alpha
Helix 8	AA8	A	342	348	Right-handed alpha
Helix 9	AA9	A	351	360	Right-handed alpha
Helix 10	AB1	A	415	429	Right-handed alpha
Helix 11	AB2	A	434	444	Right-handed alpha
Helix 12	AB3	A	460	463	Right-handed 310
Helix 13	AB4	A	469	488	Right-handed alpha
Helix 14	AB5	A	489	493	Right-handed 310
Helix 15	AB6	B	92	96	Right-handed 310
Helix 16	AB7	B	128	134	Right-handed alpha
Helix 17	AB8	B	195	205	Right-handed alpha
Helix 18	AB9	B	253	263	Right-handed alpha
Helix 19	AC1	B	294	303	Right-handed alpha
Helix 20	AC2	B	309	321	Right-handed alpha
Helix 21	AC3	B	342	349	Right-handed alpha
Helix 22	AC4	B	351	360	Right-handed alpha
Helix 23	AC5	B	415	428	Right-handed alpha
Helix 24	AC6	B	434	445	Right-handed alpha
Helix 25	AC7	B	460	463	Right-handed 310
Helix 26	AC8	B	469	488	Right-handed alpha
Helix 27	AC9	B	489	493	Right-handed 310

There are 18 sheets in PDB entry 6CXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	45	47	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	61	65	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	508	512	parallel
Strand 3	A	501	505	anti-parallel
Strand 4	A	216	217	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	90	91	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	167	170	parallel
Strand 3	A	161	164	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	270	286	anti-parallel
Strand 3	A	323	341	anti-parallel
Strand 4	A	404	409	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	323	341	anti-parallel
Strand 3	A	404	409	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	458	first strand
Strand 2	A	323	341	anti-parallel
Strand 3	A	137	138	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	184	first strand
Strand 2	A	270	286	anti-parallel
Strand 3	A	323	341	anti-parallel
Strand 4	A	450	458	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	270	286	anti-parallel
Strand 3	A	175	184	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	45	47	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	61	65	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	508	512	parallel
Strand 3	B	501	505	anti-parallel
Strand 4	B	216	217	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	90	91	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	168	170	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	184	first strand
Strand 2	B	270	286	anti-parallel
Strand 3	B	323	341	anti-parallel
Strand 4	B	404	409	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	193	first strand
Strand 2	B	270	286	anti-parallel
Strand 3	B	323	341	anti-parallel
Strand 4	B	450	458	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	518	first strand
Strand 2	B	524	525	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CXO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CXO