Analysis of interatomic Contacts of Structural Units in PDB entry:
6CY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CY1 entry

There are 2 chains in PDB entry 6CY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3LYS 316
B
 MET 0LYS 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6CY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 35Right-handed alpha
Helix 2
AA2
A
42 56Right-handed alpha
Helix 3
AA3
A
59 77Right-handed alpha
Helix 4
AA4
A
81 83Right-handed 310
Helix 5
AA5
A
84 98Right-handed alpha
Helix 6
AA6
A
124 141Right-handed alpha
Helix 7
AA7
A
154 169Right-handed alpha
Helix 8
AA8
A
180 195Right-handed alpha
Helix 9
AA9
A
210 227Right-handed alpha
Helix 10
AB1
A
245 259Right-handed alpha
Helix 11
AB2
A
276 285Right-handed alpha
Helix 12
AB3
A
297 299Right-handed 310
Helix 13
AB4
A
305 314Right-handed alpha
Helix 14
AB5
B
9 20Right-handed alpha
Helix 15
AB6
B
20 34Right-handed alpha
Helix 16
AB7
B
42 56Right-handed alpha
Helix 17
AB8
B
59 75Right-handed alpha
Helix 18
AB9
B
81 83Right-handed 310
Helix 19
AC1
B
84 98Right-handed alpha
Helix 20
AC2
B
126 141Right-handed alpha
Helix 21
AC3
B
154 169Right-handed alpha
Helix 22
AC4
B
180 195Right-handed alpha
Helix 23
AC5
B
210 227Right-handed alpha
Helix 24
AC6
B
245 259Right-handed alpha
Helix 25
AC7
B
276 285Right-handed alpha
Helix 26
AC8
B
297 299Right-handed 310
Helix 27
AC9
B
305 314Right-handed alpha
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There are 2 sheets in PDB entry 6CY1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
145 149parallel
Strand 3
A
199 203parallel
Strand 4
A
115 120parallel
Strand 5
A
235 241parallel
Strand 6
A
263 267parallel
Strand 7
A
289 293parallel
Strand 8
A
301 303anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
145 149parallel
Strand 3
B
199 203parallel
Strand 4
B
115 120parallel
Strand 5
B
235 241parallel
Strand 6
B
263 267parallel
Strand 7
B
289 293parallel
Strand 8
B
301 303anti-parallel
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