Analysis of interatomic Contacts of Structural Units in PDB entry:
6CY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CY8 entry

There are 2 chains in PDB entry 6CY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1LEU 380
A
 ILE 6ILE 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6CY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
6 20Right-handed alpha
Helix 2
AA2
B
21 23Right-handed 310
Helix 3
AA3
B
34 45Right-handed alpha
Helix 4
AA4
B
46 49Right-handed 310
Helix 5
AA5
B
63 78Right-handed alpha
Helix 6
AA6
B
80 94Right-handed alpha
Helix 7
AA7
B
94 102Right-handed alpha
Helix 8
AA8
B
103 115Right-handed alpha
Helix 9
AA9
B
173 179Right-handed 310
Helix 10
AB1
B
230 246Right-handed alpha
Helix 11
AB2
B
247 268Right-handed alpha
Helix 12
AB3
B
274 277Right-handed 310
Helix 13
AB4
B
278 307Right-handed alpha
Helix 14
AB5
B
312 339Right-handed alpha
Helix 15
AB6
B
339 344Right-handed alpha
Helix 16
AB7
B
350 360Right-handed alpha
Helix 17
AB8
B
365 378Right-handed alpha
Helix 18
AB9
A
7 12Right-handed alpha
Helix 19
AC1
A
34 50Right-handed alpha
Helix 20
AC2
A
54 58Right-handed 310
Helix 21
AC3
A
65 73Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6CY8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
165 171parallel
Strand 3
B
181 187anti-parallel
Strand 4
B
224 225anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
147 158anti-parallel
Strand 3
B
209 220anti-parallel
Strand 4
B
193 195anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il