Analysis of interatomic Contacts of Structural Units in PDB entry:
6CYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CYJ entry

There are 2 chains in PDB entry 6CYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 152SER 480
B
 PRO 152SER 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6CYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 165Right-handed alpha
Helix 2
AA2
A
169 183Right-handed alpha
Helix 3
AA3
A
189 203Right-handed alpha
Helix 4
AA4
A
234 251Right-handed alpha
Helix 5
AA5
A
251 260Right-handed alpha
Helix 6
AA6
A
266 287Right-handed alpha
Helix 7
AA7
A
288 299Right-handed alpha
Helix 8
AA8
A
302 311Right-handed alpha
Helix 9
AA9
A
313 322Right-handed alpha
Helix 10
AB1
A
366 371Right-handed 310
Helix 11
AB2
A
421 430Right-handed 310
Helix 12
AB3
A
436 440Right-handed 310
Helix 13
AB4
A
446 450Right-handed 310
Helix 14
AB5
B
153 165Right-handed alpha
Helix 15
AB6
B
169 183Right-handed alpha
Helix 16
AB7
B
189 203Right-handed alpha
Helix 17
AB8
B
234 251Right-handed alpha
Helix 18
AB9
B
251 260Right-handed alpha
Helix 19
AC1
B
266 287Right-handed alpha
Helix 20
AC2
B
288 299Right-handed alpha
Helix 21
AC3
B
302 311Right-handed alpha
Helix 22
AC4
B
313 322Right-handed alpha
Helix 23
AC5
B
366 371Right-handed 310
Helix 24
AC6
B
421 430Right-handed 310
Helix 25
AC7
B
436 440Right-handed 310
Helix 26
AC8
B
446 450Right-handed 310
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There are 6 sheets in PDB entry 6CYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
226 230parallel
Strand 3
A
216 221anti-parallel
Strand 4
B
473 475anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
329 330anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 350first strand
Strand 2
A
335 339anti-parallel
Strand 3
A
411 419anti-parallel
Strand 4
A
390 399anti-parallel
Strand 5
A
379 384anti-parallel
Strand 6
A
441 442parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 475first strand
Strand 2
B
216 221anti-parallel
Strand 3
B
226 230anti-parallel
Strand 4
B
205 209parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
329 330anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 350first strand
Strand 2
B
335 339anti-parallel
Strand 3
B
411 419anti-parallel
Strand 4
B
390 399anti-parallel
Strand 5
B
379 384anti-parallel
Strand 6
B
441 442parallel
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