Analysis of interatomic Contacts of Structural Units in PDB entry:
6CYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CYL entry

There are 4 chains in PDB entry 6CYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5ASP 200
B
 SER 2LYS 198
C
 SER 2LYS 198
D
 VAL 3GLY 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6CYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 33Right-handed alpha
Helix 2
AA2
A
33 55Right-handed alpha
Helix 3
AA3
A
57 84Right-handed alpha
Helix 4
AA4
A
90 97Right-handed 310
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
111 126Right-handed alpha
Helix 7
AA7
A
165 168Right-handed 310
Helix 8
AA8
A
169 174Right-handed alpha
Helix 9
AA9
A
176 185Right-handed alpha
Helix 10
AB1
A
186 188Right-handed 310
Helix 11
AB2
A
189 199Right-handed alpha
Helix 12
AB3
B
23 33Right-handed alpha
Helix 13
AB4
B
33 55Right-handed alpha
Helix 14
AB5
B
57 64Right-handed alpha
Helix 15
AB6
B
64 84Right-handed alpha
Helix 16
AB7
B
90 97Right-handed 310
Helix 17
AB8
B
98 110Right-handed alpha
Helix 18
AB9
B
111 126Right-handed alpha
Helix 19
AC1
B
165 168Right-handed 310
Helix 20
AC2
B
169 174Right-handed alpha
Helix 21
AC3
B
176 185Right-handed alpha
Helix 22
AC4
B
186 188Right-handed 310
Helix 23
AC5
B
189 198Right-handed alpha
Helix 24
AC6
C
23 33Right-handed alpha
Helix 25
AC7
C
33 55Right-handed alpha
Helix 26
AC8
C
57 64Right-handed alpha
Helix 27
AC9
C
64 84Right-handed alpha
Helix 28
AD1
C
90 97Right-handed 310
Helix 29
AD2
C
98 110Right-handed alpha
Helix 30
AD3
C
111 126Right-handed alpha
Helix 31
AD4
C
165 168Right-handed 310
Helix 32
AD5
C
169 174Right-handed alpha
Helix 33
AD6
C
176 185Right-handed alpha
Helix 34
AD7
C
186 188Right-handed 310
Helix 35
AD8
C
189 198Right-handed alpha
Helix 36
AD9
D
23 33Right-handed alpha
Helix 37
AE1
D
33 55Right-handed alpha
Helix 38
AE2
D
57 64Right-handed alpha
Helix 39
AE3
D
64 84Right-handed alpha
Helix 40
AE4
D
90 97Right-handed 310
Helix 41
AE5
D
98 110Right-handed alpha
Helix 42
AE6
D
111 126Right-handed alpha
Helix 43
AE7
D
165 168Right-handed 310
Helix 44
AE8
D
169 174Right-handed alpha
Helix 45
AE9
D
176 185Right-handed alpha
Helix 46
AF1
D
186 188Right-handed 310
Helix 47
AF2
D
189 199Right-handed alpha
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There are 4 sheets in PDB entry 6CYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
130 137anti-parallel
Strand 3
A
156 163anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 147first strand
Strand 2
B
130 137anti-parallel
Strand 3
B
157 163anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 147first strand
Strand 2
C
130 137anti-parallel
Strand 3
C
157 163anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 147first strand
Strand 2
D
130 137anti-parallel
Strand 3
D
156 163anti-parallel
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