Analysis of interatomic Contacts of Structural Units in PDB entry:
6CYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CYM entry

There are 4 chains in PDB entry 6CYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 15PHE 271
B
 ALA 1ILE 27
C
 ILE 15PHE 271
D
 ALA 1ASP 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 6CYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 58Right-handed 310
Helix 2
AA2
A
62 65Right-handed 310
Helix 3
AA3
A
69 71Right-handed 310
Helix 4
AA4
A
136 144Right-handed alpha
Helix 5
AA5
A
183 191Right-handed alpha
Helix 6
AA6
A
260 271Right-handed alpha
Helix 7
AA7
B
18 26Right-handed alpha
Helix 8
AA8
C
55 58Right-handed 310
Helix 9
AA9
C
62 65Right-handed 310
Helix 10
AB1
C
69 71Right-handed 310
Helix 11
AB2
C
136 144Right-handed alpha
Helix 12
AB3
C
183 191Right-handed alpha
Helix 13
AB4
C
205 209Right-handed 310
Helix 14
AB5
C
260 269Right-handed alpha
Helix 15
AB6
D
18 26Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6CYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
175 182anti-parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
252 256anti-parallel
Strand 5
A
233 241anti-parallel
Strand 6
A
222 226anti-parallel
Strand 7
A
149 154anti-parallel
Strand 8
A
175 182anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
91 100anti-parallel
Strand 5
A
115 119anti-parallel
Strand 6
A
51 54anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
66 67anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 20first strand
Strand 2
C
175 182anti-parallel
Strand 3
C
199 202anti-parallel
Strand 4
C
252 256anti-parallel
Strand 5
C
233 241anti-parallel
Strand 6
C
222 226anti-parallel
Strand 7
C
149 154anti-parallel
Strand 8
C
175 182anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 45first strand
Strand 2
C
29 34anti-parallel
Strand 3
C
73 77anti-parallel
Strand 4
C
91 100anti-parallel
Strand 5
C
115 119anti-parallel
Strand 6
C
51 54anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
66 67anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il