Analysis of interatomic Contacts of Structural Units in PDB entry:
6CYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CYZ entry

There are 2 chains in PDB entry 6CYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ARG 306
B
 SER 2ARG 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6CYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 79Right-handed alpha
Helix 2
AA2
A
101 121Right-handed alpha
Helix 3
AA3
A
127 140Right-handed alpha
Helix 4
AA4
A
142 151Right-handed alpha
Helix 5
AA5
A
204 223Right-handed alpha
Helix 6
AA6
A
224 226Right-handed 310
Helix 7
AA7
A
227 232Right-handed alpha
Helix 8
AA8
A
237 242Right-handed alpha
Helix 9
AA9
A
245 258Right-handed alpha
Helix 10
AB1
A
280 290Right-handed alpha
Helix 11
AB2
B
66 79Right-handed alpha
Helix 12
AB3
B
101 121Right-handed alpha
Helix 13
AB4
B
127 140Right-handed alpha
Helix 14
AB5
B
142 151Right-handed alpha
Helix 15
AB6
B
204 223Right-handed alpha
Helix 16
AB7
B
224 226Right-handed 310
Helix 17
AB8
B
227 232Right-handed alpha
Helix 18
AB9
B
237 243Right-handed alpha
Helix 19
AC1
B
245 258Right-handed alpha
Helix 20
AC2
B
280 290Right-handed alpha
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There are 9 sheets in PDB entry 6CYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
81 82parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
86 92parallel
Strand 3
A
29 43anti-parallel
Strand 4
A
153 159anti-parallel
Strand 5
A
166 172anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
86 92parallel
Strand 3
A
29 43anti-parallel
Strand 4
A
10 20anti-parallel
Strand 5
A
304 306anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
271 275anti-parallel
Strand 3
A
179 184anti-parallel
Strand 4
A
293 297anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
B
201 203anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
81 82parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
B
86 92parallel
Strand 3
B
29 43anti-parallel
Strand 4
B
153 159anti-parallel
Strand 5
B
166 172anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
B
86 92parallel
Strand 3
B
29 43anti-parallel
Strand 4
B
10 20anti-parallel
Strand 5
B
304 305anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 264first strand
Strand 2
B
271 275anti-parallel
Strand 3
B
179 184anti-parallel
Strand 4
B
293 297anti-parallel
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