Analysis of interatomic Contacts of Structural Units in PDB entry:
6CZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CZM entry

There are 4 chains in PDB entry 6CZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 36	LEU 373
B	GLU 39	GLY 372
C	ASN 33	GLY 372
D	SER 36	THR 361

There are 79 helices in PDB entry 6CZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	61	Right-handed alpha
Helix 2	AA2	A	89	99	Right-handed alpha
Helix 3	AA3	A	109	117	Right-handed alpha
Helix 4	AA4	A	143	147	Right-handed 310
Helix 5	AA5	A	151	158	Right-handed alpha
Helix 6	AA6	A	175	184	Right-handed alpha
Helix 7	AA7	A	197	201	Right-handed 310
Helix 8	AA8	A	217	223	Right-handed alpha
Helix 9	AA9	A	244	250	Right-handed alpha
Helix 10	AB1	A	252	270	Right-handed alpha
Helix 11	AB2	A	284	295	Right-handed alpha
Helix 12	AB3	A	332	343	Right-handed alpha
Helix 13	AB4	A	362	373	Right-handed alpha
Helix 14	AB5	B	48	61	Right-handed alpha
Helix 15	AB6	B	89	100	Right-handed alpha
Helix 16	AB7	B	109	117	Right-handed alpha
Helix 17	AB8	B	175	185	Right-handed alpha
Helix 18	AB9	B	197	199	Right-handed 310
Helix 19	AC1	B	200	205	Right-handed alpha
Helix 20	AC2	B	217	223	Right-handed alpha
Helix 21	AC3	B	244	250	Right-handed alpha
Helix 22	AC4	B	252	271	Right-handed alpha
Helix 23	AC5	B	284	294	Right-handed alpha
Helix 24	AC6	B	295	299	Right-handed 310
Helix 25	AC7	B	332	343	Right-handed alpha
Helix 26	AC8	B	362	372	Right-handed alpha
Helix 27	AC9	C	48	61	Right-handed alpha
Helix 28	AD1	C	89	99	Right-handed alpha
Helix 29	AD2	C	109	117	Right-handed alpha
Helix 30	AD3	C	143	147	Right-handed 310
Helix 31	AD4	C	151	157	Right-handed alpha
Helix 32	AD5	C	175	184	Right-handed alpha
Helix 33	AD6	C	197	199	Right-handed 310
Helix 34	AD7	C	200	205	Right-handed alpha
Helix 35	AD8	C	217	223	Right-handed alpha
Helix 36	AD9	C	244	250	Right-handed alpha
Helix 37	AE1	C	252	271	Right-handed alpha
Helix 38	AE2	C	284	294	Right-handed alpha
Helix 39	AE3	C	332	343	Right-handed alpha
Helix 40	AE4	C	361	372	Right-handed alpha
Helix 41	AE5	D	48	61	Right-handed alpha
Helix 42	AE6	D	89	100	Right-handed alpha
Helix 43	AE7	D	109	117	Right-handed alpha
Helix 44	AE8	D	143	147	Right-handed 310
Helix 45	AE9	D	151	157	Right-handed alpha
Helix 46	AF1	D	175	185	Right-handed alpha
Helix 47	AF2	D	197	201	Right-handed 310
Helix 48	AF3	D	217	223	Right-handed alpha
Helix 49	AF4	D	244	250	Right-handed alpha
Helix 50	AF5	D	252	270	Right-handed alpha
Helix 51	AF6	D	284	295	Right-handed alpha
Helix 52	AF7	D	332	343	Right-handed alpha
Helix 53	AF8	D	361	372	Right-handed alpha
Helix 54	AF9	E	48	61	Right-handed alpha
Helix 55	AG1	E	89	100	Right-handed alpha
Helix 56	AG2	E	109	117	Right-handed alpha
Helix 57	AG3	E	151	157	Right-handed alpha
Helix 58	AG4	E	175	184	Right-handed alpha
Helix 59	AG5	E	197	201	Right-handed 310
Helix 60	AG6	E	217	223	Right-handed alpha
Helix 61	AG7	E	244	250	Right-handed alpha
Helix 62	AG8	E	252	271	Right-handed alpha
Helix 63	AG9	E	284	295	Right-handed alpha
Helix 64	AH1	E	296	299	Right-handed 310
Helix 65	AH2	E	332	343	Right-handed alpha
Helix 66	AH3	E	362	372	Right-handed alpha
Helix 67	AH4	F	48	61	Right-handed alpha
Helix 68	AH5	F	89	99	Right-handed alpha
Helix 69	AH6	F	109	117	Right-handed alpha
Helix 70	AH7	F	151	155	Right-handed 310
Helix 71	AH8	F	176	184	Right-handed alpha
Helix 72	AH9	F	197	199	Right-handed 310
Helix 73	AI1	F	200	205	Right-handed alpha
Helix 74	AI2	F	217	223	Right-handed alpha
Helix 75	AI3	F	244	250	Right-handed alpha
Helix 76	AI4	F	252	271	Right-handed alpha
Helix 77	AI5	F	284	295	Right-handed alpha
Helix 78	AI6	F	332	343	Right-handed alpha
Helix 79	AI7	F	362	372	Right-handed alpha

There are 22 sheets in PDB entry 6CZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	83	88	anti-parallel
Strand 3	A	40	45	parallel
Strand 4	A	104	108	parallel
Strand 5	A	238	243	anti-parallel
Strand 6	A	122	126	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	167	171	parallel
Strand 3	A	209	214	parallel
Strand 4	A	134	141	anti-parallel
Strand 5	A	225	236	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	312	first strand
Strand 2	A	317	329	anti-parallel
Strand 3	A	273	281	anti-parallel
Strand 4	A	345	351	anti-parallel
Strand 5	B	355	357	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	C	345	351	anti-parallel
Strand 3	C	273	281	anti-parallel
Strand 4	C	317	329	anti-parallel
Strand 5	C	305	312	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	84	88	anti-parallel
Strand 3	B	41	45	parallel
Strand 4	B	104	108	parallel
Strand 5	B	238	243	anti-parallel
Strand 6	B	122	126	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	214	first strand
Strand 2	B	134	141	anti-parallel
Strand 3	B	225	236	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	190	192	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	312	first strand
Strand 2	B	317	329	anti-parallel
Strand 3	B	273	281	anti-parallel
Strand 4	B	345	351	anti-parallel
Strand 5	C	355	357	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	77	first strand
Strand 2	C	83	88	anti-parallel
Strand 3	C	40	45	parallel
Strand 4	C	104	108	parallel
Strand 5	C	238	243	anti-parallel
Strand 6	C	122	126	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	192	first strand
Strand 2	C	167	170	parallel
Strand 3	C	209	214	parallel
Strand 4	C	134	141	anti-parallel
Strand 5	C	225	226	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	192	first strand
Strand 2	C	167	170	parallel
Strand 3	C	209	214	parallel
Strand 4	C	134	141	anti-parallel
Strand 5	C	232	236	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	84	88	anti-parallel
Strand 3	D	41	45	parallel
Strand 4	D	104	108	parallel
Strand 5	D	238	243	anti-parallel
Strand 6	D	122	126	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	192	first strand
Strand 2	D	167	171	parallel
Strand 3	D	209	214	parallel
Strand 4	D	134	141	anti-parallel
Strand 5	D	225	236	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	312	first strand
Strand 2	D	317	329	anti-parallel
Strand 3	D	273	281	anti-parallel
Strand 4	D	345	352	anti-parallel
Strand 5	E	355	357	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	357	first strand
Strand 2	F	345	351	anti-parallel
Strand 3	F	273	281	anti-parallel
Strand 4	F	317	329	anti-parallel
Strand 5	F	305	312	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	77	first strand
Strand 2	E	83	88	anti-parallel
Strand 3	E	40	45	parallel
Strand 4	E	104	108	parallel
Strand 5	E	238	243	anti-parallel
Strand 6	E	122	126	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	192	first strand
Strand 2	E	167	171	parallel
Strand 3	E	209	214	parallel
Strand 4	E	134	141	anti-parallel
Strand 5	E	225	226	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	192	first strand
Strand 2	E	167	171	parallel
Strand 3	E	209	214	parallel
Strand 4	E	134	141	anti-parallel
Strand 5	E	232	236	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	312	first strand
Strand 2	E	317	329	anti-parallel
Strand 3	E	273	281	anti-parallel
Strand 4	E	345	352	anti-parallel
Strand 5	F	355	357	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	77	first strand
Strand 2	F	83	88	anti-parallel
Strand 3	F	40	45	parallel
Strand 4	F	104	108	parallel
Strand 5	F	238	243	anti-parallel
Strand 6	F	122	126	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	214	first strand
Strand 2	F	134	139	anti-parallel
Strand 3	F	234	236	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	170	first strand
Strand 2	F	189	192	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CZM