Analysis of interatomic Contacts of Structural Units in PDB entry:
6D03

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D03 entry

There are 5 chains in PDB entry 6D03 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 120	PHE 760
B	PHE 120	PHE 760
C	VAL 1	PRO 679
D	VAL 1	PRO 679
E	SER 168	ILE 633

There are104 helices in PDB entry 6D03. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	123	136	Right-handed alpha
Helix 2	AA2	A	139	147	Right-handed alpha
Helix 3	AA3	A	159	176	Right-handed alpha
Helix 4	AA4	A	241	246	Right-handed alpha
Helix 5	AA5	A	263	274	Right-handed alpha
Helix 6	AA6	A	339	349	Right-handed alpha
Helix 7	AA7	A	419	439	Right-handed alpha
Helix 8	AA8	A	460	470	Right-handed alpha
Helix 9	AA9	A	502	511	Right-handed alpha
Helix 10	AB1	A	541	549	Right-handed alpha
Helix 11	AB2	A	572	580	Right-handed alpha
Helix 12	AB3	A	582	602	Right-handed alpha
Helix 13	AB4	A	610	612	Right-handed 310
Helix 14	AB5	A	613	626	Right-handed alpha
Helix 15	AB6	A	628	636	Right-handed alpha
Helix 16	AB7	A	639	662	Right-handed alpha
Helix 17	AB8	A	668	679	Right-handed alpha
Helix 18	AB9	A	682	686	Right-handed 310
Helix 19	AC1	A	708	718	Right-handed alpha
Helix 20	AC2	A	719	722	Right-handed 310
Helix 21	AC3	A	727	750	Right-handed alpha
Helix 22	AC4	B	123	136	Right-handed alpha
Helix 23	AC5	B	140	147	Right-handed alpha
Helix 24	AC6	B	159	176	Right-handed alpha
Helix 25	AC7	B	239	246	Right-handed alpha
Helix 26	AC8	B	263	274	Right-handed alpha
Helix 27	AC9	B	338	346	Right-handed alpha
Helix 28	AD1	B	419	439	Right-handed alpha
Helix 29	AD2	B	460	470	Right-handed alpha
Helix 30	AD3	B	502	510	Right-handed alpha
Helix 31	AD4	B	541	546	Right-handed alpha
Helix 32	AD5	B	572	580	Right-handed alpha
Helix 33	AD6	B	582	603	Right-handed alpha
Helix 34	AD7	B	613	627	Right-handed alpha
Helix 35	AD8	B	628	636	Right-handed alpha
Helix 36	AD9	B	639	662	Right-handed alpha
Helix 37	AE1	B	668	680	Right-handed alpha
Helix 38	AE2	B	681	686	Right-handed 310
Helix 39	AE3	B	708	717	Right-handed alpha
Helix 40	AE4	B	717	722	Right-handed alpha
Helix 41	AE5	B	727	750	Right-handed alpha
Helix 42	AE6	C	12	30	Right-handed alpha
Helix 43	AE7	C	44	54	Right-handed alpha
Helix 44	AE8	C	63	68	Right-handed alpha
Helix 45	AE9	C	124	135	Right-handed alpha
Helix 46	AF1	C	136	139	Right-handed 310
Helix 47	AF2	C	145	154	Right-handed alpha
Helix 48	AF3	C	186	197	Right-handed alpha
Helix 49	AF4	C	208	214	Right-handed alpha
Helix 50	AF5	C	216	223	Right-handed alpha
Helix 51	AF6	C	259	275	Right-handed alpha
Helix 52	AF7	C	310	316	Right-handed alpha
Helix 53	AF8	C	317	329	Right-handed alpha
Helix 54	AF9	C	350	362	Right-handed alpha
Helix 55	AG1	C	373	384	Right-handed alpha
Helix 56	AG2	C	392	403	Right-handed alpha
Helix 57	AG3	C	460	472	Right-handed alpha
Helix 58	AG4	C	492	497	Right-handed alpha
Helix 59	AG5	C	515	527	Right-handed alpha
Helix 60	AG6	C	536	542	Right-handed alpha
Helix 61	AG7	C	548	553	Right-handed alpha
Helix 62	AG8	C	593	609	Right-handed alpha
Helix 63	AG9	C	646	652	Right-handed alpha
Helix 64	AH1	C	652	661	Right-handed alpha
Helix 65	AH2	C	668	675	Right-handed alpha
Helix 66	AH3	D	12	29	Right-handed alpha
Helix 67	AH4	D	44	54	Right-handed alpha
Helix 68	AH5	D	63	68	Right-handed alpha
Helix 69	AH6	D	130	136	Right-handed alpha
Helix 70	AH7	D	145	154	Right-handed alpha
Helix 71	AH8	D	167	172	Right-handed 310
Helix 72	AH9	D	187	197	Right-handed alpha
Helix 73	AI1	D	208	214	Right-handed alpha
Helix 74	AI2	D	216	221	Right-handed alpha
Helix 75	AI3	D	260	274	Right-handed alpha
Helix 76	AI4	D	310	316	Right-handed alpha
Helix 77	AI5	D	316	329	Right-handed alpha
Helix 78	AI6	D	350	362	Right-handed alpha
Helix 79	AI7	D	373	383	Right-handed alpha
Helix 80	AI8	D	392	402	Right-handed alpha
Helix 81	AI9	D	460	472	Right-handed alpha
Helix 82	AJ1	D	515	527	Right-handed alpha
Helix 83	AJ2	D	536	542	Right-handed alpha
Helix 84	AJ3	D	593	608	Right-handed alpha
Helix 85	AJ4	D	646	652	Right-handed alpha
Helix 86	AJ5	D	652	661	Right-handed alpha
Helix 87	AJ6	D	662	666	Right-handed 310
Helix 88	AJ7	D	668	675	Right-handed alpha
Helix 89	AJ8	D	676	678	Right-handed 310
Helix 90	AJ9	E	197	210	Right-handed alpha
Helix 91	AK1	E	217	240	Right-handed alpha
Helix 92	AK2	E	240	256	Right-handed alpha
Helix 93	AK3	E	256	262	Right-handed alpha
Helix 94	AK4	E	266	288	Right-handed alpha
Helix 95	AK5	E	289	309	Right-handed alpha
Helix 96	AK6	E	319	335	Right-handed alpha
Helix 97	AK7	E	337	362	Right-handed alpha
Helix 98	AK8	E	368	405	Right-handed alpha
Helix 99	AK9	E	415	459	Right-handed alpha
Helix 100	AL1	E	462	477	Right-handed alpha
Helix 101	AL2	E	478	510	Right-handed alpha
Helix 102	AL3	E	521	566	Right-handed alpha
Helix 103	AL4	E	574	589	Right-handed alpha
Helix 104	AL5	E	591	632	Right-handed alpha

There are 26 sheets in PDB entry 6D03. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	193	first strand
Strand 2	A	379	393	anti-parallel
Strand 3	A	446	452	anti-parallel
Strand 4	A	398	406	parallel
Strand 5	A	478	483	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	372	376	anti-parallel
Strand 4	A	227	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	299	300	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	254	258	parallel
Strand 3	A	279	282	parallel
Strand 4	A	334	336	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	498	first strand
Strand 2	A	553	556	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	193	first strand
Strand 2	B	379	393	anti-parallel
Strand 3	B	447	453	anti-parallel
Strand 4	B	402	408	parallel
Strand 5	B	478	483	parallel
Strand 6	B	552	556	parallel
Strand 7	B	495	498	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	214	first strand
Strand 2	B	200	203	anti-parallel
Strand 3	B	372	377	anti-parallel
Strand 4	B	226	230	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	299	300	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	254	258	parallel
Strand 3	B	279	282	parallel
Strand 4	B	334	336	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	364	367	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	36	41	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	250	254	anti-parallel
Strand 3	C	77	84	anti-parallel
Strand 4	C	301	304	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	117	118	parallel
Strand 3	C	202	206	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	224	226	anti-parallel
Strand 6	C	232	234	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	117	118	parallel
Strand 3	C	202	206	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	244	246	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	366	371	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	391	first strand
Strand 2	C	586	589	anti-parallel
Strand 3	C	405	410	anti-parallel
Strand 4	C	638	640	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	450	first strand
Strand 2	C	530	534	parallel
Strand 3	C	426	432	anti-parallel
Strand 4	C	560	562	anti-parallel
Strand 5	C	568	569	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	450	first strand
Strand 2	C	530	534	parallel
Strand 3	C	426	432	anti-parallel
Strand 4	C	580	582	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	36	41	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	250	254	anti-parallel
Strand 3	D	77	84	anti-parallel
Strand 4	D	301	304	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	117	118	parallel
Strand 3	D	202	206	parallel
Strand 4	D	94	102	anti-parallel
Strand 5	D	223	225	anti-parallel
Strand 6	D	233	234	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	117	118	parallel
Strand 3	D	202	206	parallel
Strand 4	D	94	102	anti-parallel
Strand 5	D	244	247	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	345	first strand
Strand 2	D	366	369	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	391	first strand
Strand 2	D	586	589	anti-parallel
Strand 3	D	405	411	anti-parallel
Strand 4	D	637	640	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	484	first strand
Strand 2	D	449	450	parallel
Strand 3	D	530	534	parallel
Strand 4	D	426	432	anti-parallel
Strand 5	D	560	562	anti-parallel
Strand 6	D	568	570	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	484	first strand
Strand 2	D	449	450	parallel
Strand 3	D	530	534	parallel
Strand 4	D	426	432	anti-parallel
Strand 5	D	580	582	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D03

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D03