Analysis of interatomic Contacts of Structural Units in PDB entry:
6D04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D04 entry

There are 6 chains in PDB entry 6D04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 120	PHE 760
B	PHE 120	PHE 760
C	VAL 1	PRO 679
D	VAL 1	PRO 679
E	SER 168	ILE 633
F	SER 168	ILE 633

There are118 helices in PDB entry 6D04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	123	136	Right-handed alpha
Helix 2	AA2	A	139	147	Right-handed alpha
Helix 3	AA3	A	159	176	Right-handed alpha
Helix 4	AA4	A	239	245	Right-handed alpha
Helix 5	AA5	A	263	274	Right-handed alpha
Helix 6	AA6	A	338	347	Right-handed alpha
Helix 7	AA7	A	419	439	Right-handed alpha
Helix 8	AA8	A	460	470	Right-handed alpha
Helix 9	AA9	A	502	511	Right-handed alpha
Helix 10	AB1	A	527	531	Right-handed 310
Helix 11	AB2	A	541	546	Right-handed alpha
Helix 12	AB3	A	573	580	Right-handed alpha
Helix 13	AB4	A	583	603	Right-handed alpha
Helix 14	AB5	A	610	612	Right-handed 310
Helix 15	AB6	A	613	627	Right-handed alpha
Helix 16	AB7	A	628	635	Right-handed alpha
Helix 17	AB8	A	639	662	Right-handed alpha
Helix 18	AB9	A	668	681	Right-handed alpha
Helix 19	AC1	A	682	686	Right-handed 310
Helix 20	AC2	A	708	721	Right-handed alpha
Helix 21	AC3	A	727	750	Right-handed alpha
Helix 22	AC4	B	123	136	Right-handed alpha
Helix 23	AC5	B	139	147	Right-handed alpha
Helix 24	AC6	B	159	176	Right-handed alpha
Helix 25	AC7	B	239	245	Right-handed alpha
Helix 26	AC8	B	263	274	Right-handed alpha
Helix 27	AC9	B	338	347	Right-handed alpha
Helix 28	AD1	B	419	439	Right-handed alpha
Helix 29	AD2	B	460	470	Right-handed alpha
Helix 30	AD3	B	502	511	Right-handed alpha
Helix 31	AD4	B	527	531	Right-handed 310
Helix 32	AD5	B	541	546	Right-handed alpha
Helix 33	AD6	B	573	580	Right-handed alpha
Helix 34	AD7	B	583	603	Right-handed alpha
Helix 35	AD8	B	610	612	Right-handed 310
Helix 36	AD9	B	613	627	Right-handed alpha
Helix 37	AE1	B	628	635	Right-handed alpha
Helix 38	AE2	B	639	662	Right-handed alpha
Helix 39	AE3	B	668	681	Right-handed alpha
Helix 40	AE4	B	682	686	Right-handed 310
Helix 41	AE5	B	708	721	Right-handed alpha
Helix 42	AE6	B	727	750	Right-handed alpha
Helix 43	AE7	C	12	29	Right-handed alpha
Helix 44	AE8	C	44	54	Right-handed alpha
Helix 45	AE9	C	63	68	Right-handed alpha
Helix 46	AF1	C	128	136	Right-handed alpha
Helix 47	AF2	C	137	139	Right-handed 310
Helix 48	AF3	C	145	154	Right-handed alpha
Helix 49	AF4	C	187	197	Right-handed alpha
Helix 50	AF5	C	208	214	Right-handed alpha
Helix 51	AF6	C	216	223	Right-handed alpha
Helix 52	AF7	C	259	275	Right-handed alpha
Helix 53	AF8	C	310	315	Right-handed alpha
Helix 54	AF9	C	316	329	Right-handed alpha
Helix 55	AG1	C	351	362	Right-handed alpha
Helix 56	AG2	C	373	384	Right-handed alpha
Helix 57	AG3	C	392	403	Right-handed alpha
Helix 58	AG4	C	460	472	Right-handed alpha
Helix 59	AG5	C	492	496	Right-handed 310
Helix 60	AG6	C	515	527	Right-handed alpha
Helix 61	AG7	C	536	542	Right-handed alpha
Helix 62	AG8	C	548	553	Right-handed alpha
Helix 63	AG9	C	593	609	Right-handed alpha
Helix 64	AH1	C	646	652	Right-handed alpha
Helix 65	AH2	C	652	661	Right-handed alpha
Helix 66	AH3	C	668	676	Right-handed alpha
Helix 67	AH4	D	12	29	Right-handed alpha
Helix 68	AH5	D	44	54	Right-handed alpha
Helix 69	AH6	D	63	68	Right-handed alpha
Helix 70	AH7	D	128	136	Right-handed alpha
Helix 71	AH8	D	137	139	Right-handed 310
Helix 72	AH9	D	145	154	Right-handed alpha
Helix 73	AI1	D	187	197	Right-handed alpha
Helix 74	AI2	D	208	214	Right-handed alpha
Helix 75	AI3	D	216	223	Right-handed alpha
Helix 76	AI4	D	259	275	Right-handed alpha
Helix 77	AI5	D	310	315	Right-handed alpha
Helix 78	AI6	D	316	329	Right-handed alpha
Helix 79	AI7	D	351	362	Right-handed alpha
Helix 80	AI8	D	373	384	Right-handed alpha
Helix 81	AI9	D	392	403	Right-handed alpha
Helix 82	AJ1	D	460	472	Right-handed alpha
Helix 83	AJ2	D	492	496	Right-handed 310
Helix 84	AJ3	D	515	527	Right-handed alpha
Helix 85	AJ4	D	536	542	Right-handed alpha
Helix 86	AJ5	D	548	553	Right-handed alpha
Helix 87	AJ6	D	593	609	Right-handed alpha
Helix 88	AJ7	D	646	652	Right-handed alpha
Helix 89	AJ8	D	652	661	Right-handed alpha
Helix 90	AJ9	D	668	676	Right-handed alpha
Helix 91	AK1	E	196	212	Right-handed alpha
Helix 92	AK2	E	216	240	Right-handed alpha
Helix 93	AK3	E	240	255	Right-handed alpha
Helix 94	AK4	E	266	308	Right-handed alpha
Helix 95	AK5	E	319	335	Right-handed alpha
Helix 96	AK6	E	337	362	Right-handed alpha
Helix 97	AK7	E	368	406	Right-handed alpha
Helix 98	AK8	E	415	477	Right-handed alpha
Helix 99	AK9	E	478	510	Right-handed alpha
Helix 100	AL1	E	511	512	Right-handed 310
Helix 101	AL2	E	513	517	Right-handed 310
Helix 102	AL3	E	519	566	Right-handed alpha
Helix 103	AL4	E	574	590	Right-handed alpha
Helix 104	AL5	E	590	633	Right-handed alpha
Helix 105	AL6	F	196	212	Right-handed alpha
Helix 106	AL7	F	216	240	Right-handed alpha
Helix 107	AL8	F	240	255	Right-handed alpha
Helix 108	AL9	F	266	308	Right-handed alpha
Helix 109	AM1	F	319	335	Right-handed alpha
Helix 110	AM2	F	337	362	Right-handed alpha
Helix 111	AM3	F	368	406	Right-handed alpha
Helix 112	AM4	F	415	477	Right-handed alpha
Helix 113	AM5	F	478	510	Right-handed alpha
Helix 114	AM6	F	511	512	Right-handed 310
Helix 115	AM7	F	513	517	Right-handed 310
Helix 116	AM8	F	519	566	Right-handed alpha
Helix 117	AM9	F	574	590	Right-handed alpha
Helix 118	AN1	F	590	633	Right-handed alpha

There are 28 sheets in PDB entry 6D04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	193	first strand
Strand 2	A	379	393	anti-parallel
Strand 3	A	446	453	anti-parallel
Strand 4	A	398	408	parallel
Strand 5	A	478	483	parallel
Strand 6	A	552	556	parallel
Strand 7	A	495	498	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	226	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	299	300	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	254	258	parallel
Strand 3	A	278	282	parallel
Strand 4	A	334	336	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	364	367	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	193	first strand
Strand 2	B	379	393	anti-parallel
Strand 3	B	446	453	anti-parallel
Strand 4	B	398	408	parallel
Strand 5	B	478	483	parallel
Strand 6	B	552	556	parallel
Strand 7	B	495	498	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	214	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	372	377	anti-parallel
Strand 4	B	226	230	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	299	300	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	254	258	parallel
Strand 3	B	278	282	parallel
Strand 4	B	334	336	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	364	367	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	36	41	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	250	253	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	301	304	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	117	118	parallel
Strand 3	C	202	206	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	224	226	anti-parallel
Strand 6	C	232	234	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	117	118	parallel
Strand 3	C	202	206	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	244	246	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	366	371	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	391	first strand
Strand 2	C	586	589	anti-parallel
Strand 3	C	405	410	anti-parallel
Strand 4	C	638	640	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	C	449	450	parallel
Strand 3	C	530	534	parallel
Strand 4	C	426	433	anti-parallel
Strand 5	C	559	562	anti-parallel
Strand 6	C	568	570	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	C	449	450	parallel
Strand 3	C	530	534	parallel
Strand 4	C	426	433	anti-parallel
Strand 5	C	581	582	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	36	41	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	250	253	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	301	304	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	117	118	parallel
Strand 3	D	202	206	parallel
Strand 4	D	95	101	anti-parallel
Strand 5	D	224	226	anti-parallel
Strand 6	D	232	234	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	117	118	parallel
Strand 3	D	202	206	parallel
Strand 4	D	95	101	anti-parallel
Strand 5	D	244	246	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	347	first strand
Strand 2	D	366	371	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	391	first strand
Strand 2	D	586	589	anti-parallel
Strand 3	D	405	410	anti-parallel
Strand 4	D	638	640	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	484	first strand
Strand 2	D	449	450	parallel
Strand 3	D	530	534	parallel
Strand 4	D	426	433	anti-parallel
Strand 5	D	559	562	anti-parallel
Strand 6	D	568	570	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	484	first strand
Strand 2	D	449	450	parallel
Strand 3	D	530	534	parallel
Strand 4	D	426	433	anti-parallel
Strand 5	D	581	582	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	181	first strand
Strand 2	E	188	189	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	180	181	first strand
Strand 2	F	188	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D04

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D04