Analysis of interatomic Contacts of Structural Units in PDB entry:
6D05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D05 entry

There are 6 chains in PDB entry 6D05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 120	PHE 760
B	PHE 120	PHE 760
C	VAL 1	PRO 679
D	VAL 1	PRO 679
E	SER 168	ILE 633
F	SER 168	ILE 633

There are104 helices in PDB entry 6D05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	123	138	Right-handed alpha
Helix 2	AA2	A	140	147	Right-handed alpha
Helix 3	AA3	A	159	176	Right-handed alpha
Helix 4	AA4	A	239	245	Right-handed alpha
Helix 5	AA5	A	263	274	Right-handed alpha
Helix 6	AA6	A	338	347	Right-handed alpha
Helix 7	AA7	A	415	439	Right-handed alpha
Helix 8	AA8	A	460	470	Right-handed alpha
Helix 9	AA9	A	502	511	Right-handed alpha
Helix 10	AB1	A	540	547	Right-handed alpha
Helix 11	AB2	A	572	580	Right-handed alpha
Helix 12	AB3	A	583	603	Right-handed alpha
Helix 13	AB4	A	611	627	Right-handed alpha
Helix 14	AB5	A	628	635	Right-handed alpha
Helix 15	AB6	A	639	662	Right-handed alpha
Helix 16	AB7	A	668	684	Right-handed alpha
Helix 17	AB8	A	708	722	Right-handed alpha
Helix 18	AB9	A	728	750	Right-handed alpha
Helix 19	AC1	B	123	138	Right-handed alpha
Helix 20	AC2	B	140	147	Right-handed alpha
Helix 21	AC3	B	159	176	Right-handed alpha
Helix 22	AC4	B	239	245	Right-handed alpha
Helix 23	AC5	B	263	274	Right-handed alpha
Helix 24	AC6	B	338	347	Right-handed alpha
Helix 25	AC7	B	415	439	Right-handed alpha
Helix 26	AC8	B	460	470	Right-handed alpha
Helix 27	AC9	B	502	511	Right-handed alpha
Helix 28	AD1	B	540	547	Right-handed alpha
Helix 29	AD2	B	572	580	Right-handed alpha
Helix 30	AD3	B	583	603	Right-handed alpha
Helix 31	AD4	B	611	627	Right-handed alpha
Helix 32	AD5	B	628	635	Right-handed alpha
Helix 33	AD6	B	639	662	Right-handed alpha
Helix 34	AD7	B	668	684	Right-handed alpha
Helix 35	AD8	B	708	722	Right-handed alpha
Helix 36	AD9	B	728	750	Right-handed alpha
Helix 37	AE1	C	12	30	Right-handed alpha
Helix 38	AE2	C	44	54	Right-handed alpha
Helix 39	AE3	C	63	72	Right-handed alpha
Helix 40	AE4	C	128	135	Right-handed alpha
Helix 41	AE5	C	145	154	Right-handed alpha
Helix 42	AE6	C	168	172	Right-handed 310
Helix 43	AE7	C	187	197	Right-handed alpha
Helix 44	AE8	C	208	214	Right-handed alpha
Helix 45	AE9	C	216	223	Right-handed alpha
Helix 46	AF1	C	259	275	Right-handed alpha
Helix 47	AF2	C	310	316	Right-handed alpha
Helix 48	AF3	C	317	329	Right-handed alpha
Helix 49	AF4	C	350	362	Right-handed alpha
Helix 50	AF5	C	373	383	Right-handed alpha
Helix 51	AF6	C	392	403	Right-handed alpha
Helix 52	AF7	C	460	472	Right-handed alpha
Helix 53	AF8	C	515	528	Right-handed alpha
Helix 54	AF9	C	536	542	Right-handed alpha
Helix 55	AG1	C	548	553	Right-handed alpha
Helix 56	AG2	C	593	609	Right-handed alpha
Helix 57	AG3	C	646	652	Right-handed alpha
Helix 58	AG4	C	652	663	Right-handed alpha
Helix 59	AG5	C	668	677	Right-handed alpha
Helix 60	AG6	D	12	30	Right-handed alpha
Helix 61	AG7	D	44	54	Right-handed alpha
Helix 62	AG8	D	63	72	Right-handed alpha
Helix 63	AG9	D	128	135	Right-handed alpha
Helix 64	AH1	D	145	154	Right-handed alpha
Helix 65	AH2	D	168	172	Right-handed 310
Helix 66	AH3	D	187	197	Right-handed alpha
Helix 67	AH4	D	208	214	Right-handed alpha
Helix 68	AH5	D	216	223	Right-handed alpha
Helix 69	AH6	D	259	275	Right-handed alpha
Helix 70	AH7	D	310	316	Right-handed alpha
Helix 71	AH8	D	317	329	Right-handed alpha
Helix 72	AH9	D	350	362	Right-handed alpha
Helix 73	AI1	D	373	383	Right-handed alpha
Helix 74	AI2	D	392	403	Right-handed alpha
Helix 75	AI3	D	460	472	Right-handed alpha
Helix 76	AI4	D	515	528	Right-handed alpha
Helix 77	AI5	D	536	542	Right-handed alpha
Helix 78	AI6	D	548	553	Right-handed alpha
Helix 79	AI7	D	593	609	Right-handed alpha
Helix 80	AI8	D	646	652	Right-handed alpha
Helix 81	AI9	D	652	663	Right-handed alpha
Helix 82	AJ1	D	668	677	Right-handed alpha
Helix 83	AJ2	E	196	210	Right-handed alpha
Helix 84	AJ3	E	215	256	Right-handed alpha
Helix 85	AJ4	E	256	263	Right-handed alpha
Helix 86	AJ5	E	266	307	Right-handed alpha
Helix 87	AJ6	E	318	335	Right-handed alpha
Helix 88	AJ7	E	337	365	Right-handed alpha
Helix 89	AJ8	E	367	406	Right-handed alpha
Helix 90	AJ9	E	415	477	Right-handed alpha
Helix 91	AK1	E	478	513	Right-handed alpha
Helix 92	AK2	E	519	567	Right-handed alpha
Helix 93	AK3	E	574	633	Right-handed alpha
Helix 94	AK4	F	196	210	Right-handed alpha
Helix 95	AK5	F	215	256	Right-handed alpha
Helix 96	AK6	F	256	263	Right-handed alpha
Helix 97	AK7	F	266	307	Right-handed alpha
Helix 98	AK8	F	318	335	Right-handed alpha
Helix 99	AK9	F	337	365	Right-handed alpha
Helix 100	AL1	F	367	406	Right-handed alpha
Helix 101	AL2	F	415	477	Right-handed alpha
Helix 102	AL3	F	478	513	Right-handed alpha
Helix 103	AL4	F	519	567	Right-handed alpha
Helix 104	AL5	F	574	633	Right-handed alpha

There are 28 sheets in PDB entry 6D05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	193	first strand
Strand 2	A	379	393	anti-parallel
Strand 3	A	447	452	anti-parallel
Strand 4	A	402	406	parallel
Strand 5	A	478	483	parallel
Strand 6	A	552	556	parallel
Strand 7	A	495	498	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	226	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	299	300	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	254	258	parallel
Strand 3	A	278	282	parallel
Strand 4	A	334	336	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	366	367	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	193	first strand
Strand 2	B	379	393	anti-parallel
Strand 3	B	447	452	anti-parallel
Strand 4	B	402	406	parallel
Strand 5	B	478	483	parallel
Strand 6	B	552	556	parallel
Strand 7	B	495	498	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	214	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	372	377	anti-parallel
Strand 4	B	226	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	299	300	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	254	258	parallel
Strand 3	B	278	282	parallel
Strand 4	B	334	336	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	366	367	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	39	41	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	250	254	anti-parallel
Strand 3	C	77	84	anti-parallel
Strand 4	C	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	117	118	parallel
Strand 3	C	202	206	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	224	226	anti-parallel
Strand 6	C	232	233	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	117	118	parallel
Strand 3	C	202	206	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	244	246	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	366	371	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	391	first strand
Strand 2	C	586	589	anti-parallel
Strand 3	C	405	410	anti-parallel
Strand 4	C	638	640	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	427	432	anti-parallel
Strand 3	C	560	561	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	427	432	anti-parallel
Strand 3	C	580	581	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	450	first strand
Strand 2	C	483	484	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	39	41	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	250	254	anti-parallel
Strand 3	D	77	84	anti-parallel
Strand 4	D	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	117	118	parallel
Strand 3	D	202	206	parallel
Strand 4	D	95	101	anti-parallel
Strand 5	D	224	226	anti-parallel
Strand 6	D	232	233	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	117	118	parallel
Strand 3	D	202	206	parallel
Strand 4	D	95	101	anti-parallel
Strand 5	D	244	246	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	347	first strand
Strand 2	D	366	371	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	391	first strand
Strand 2	D	586	589	anti-parallel
Strand 3	D	405	410	anti-parallel
Strand 4	D	638	640	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	534	first strand
Strand 2	D	427	432	anti-parallel
Strand 3	D	560	561	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	534	first strand
Strand 2	D	427	432	anti-parallel
Strand 3	D	580	581	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	449	450	first strand
Strand 2	D	483	484	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D05

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D05