Analysis of interatomic Contacts of Structural Units in PDB entry:
6D0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D0J entry

There are 4 chains in PDB entry 6D0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8SER 402
B
 GLU 8ALA 403
D
 SER 5THR 93
C
 SER 4THR 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6D0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 49Right-handed alpha
Helix 2
AA2
A
49 55Right-handed alpha
Helix 3
AA3
A
56 72Right-handed alpha
Helix 4
AA4
A
74 77Right-handed 310
Helix 5
AA5
A
78 87Right-handed alpha
Helix 6
AA6
A
96 111Right-handed alpha
Helix 7
AA7
A
117 136Right-handed alpha
Helix 8
AA8
A
141 159Right-handed alpha
Helix 9
AA9
A
160 171Right-handed alpha
Helix 10
AB1
A
178 180Right-handed 310
Helix 11
AB2
A
181 200Right-handed alpha
Helix 12
AB3
A
215 251Right-handed alpha
Helix 13
AB4
A
253 272Right-handed alpha
Helix 14
AB5
A
281 289Right-handed alpha
Helix 15
AB6
A
297 312Right-handed alpha
Helix 16
AB7
A
318 338Right-handed alpha
Helix 17
AB8
A
340 358Right-handed alpha
Helix 18
AB9
A
360 372Right-handed alpha
Helix 19
AC1
A
375 390Right-handed alpha
Helix 20
AC2
B
10 49Right-handed alpha
Helix 21
AC3
B
49 55Right-handed alpha
Helix 22
AC4
B
56 72Right-handed alpha
Helix 23
AC5
B
74 77Right-handed 310
Helix 24
AC6
B
78 87Right-handed alpha
Helix 25
AC7
B
96 111Right-handed alpha
Helix 26
AC8
B
117 136Right-handed alpha
Helix 27
AC9
B
141 159Right-handed alpha
Helix 28
AD1
B
160 171Right-handed alpha
Helix 29
AD2
B
178 180Right-handed 310
Helix 30
AD3
B
181 200Right-handed alpha
Helix 31
AD4
B
215 251Right-handed alpha
Helix 32
AD5
B
253 272Right-handed alpha
Helix 33
AD6
B
281 289Right-handed alpha
Helix 34
AD7
B
297 312Right-handed alpha
Helix 35
AD8
B
318 338Right-handed alpha
Helix 36
AD9
B
340 358Right-handed alpha
Helix 37
AE1
B
360 372Right-handed alpha
Helix 38
AE2
B
375 390Right-handed alpha
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There are 6 sheets in PDB entry 6D0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
400 401parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
400 401parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 11first strand
Strand 2
D
20 24anti-parallel
Strand 3
D
58 61anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 53first strand
Strand 2
D
33 40anti-parallel
Strand 3
D
69 77anti-parallel
Strand 4
D
87 92anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 15first strand
Strand 2
C
20 24anti-parallel
Strand 3
C
58 61anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 53first strand
Strand 2
C
33 40anti-parallel
Strand 3
C
69 77anti-parallel
Strand 4
C
87 92anti-parallel
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