Analysis of interatomic Contacts of Structural Units in PDB entry:
6D0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D0P entry

There are 4 chains in PDB entry 6D0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	MSE 287
B	ALA 0	MSE 287
C	ALA 0	MSE 287
D	ALA 0	MSE 287

There are 24 helices in PDB entry 6D0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed alpha
Helix 2	AA2	A	33	36	Right-handed 310
Helix 3	AA3	A	110	117	Right-handed alpha
Helix 4	AA4	A	130	134	Right-handed 310
Helix 5	AA5	A	144	148	Right-handed 310
Helix 6	AA6	A	267	280	Right-handed alpha
Helix 7	AA7	B	28	32	Right-handed alpha
Helix 8	AA8	B	33	36	Right-handed 310
Helix 9	AA9	B	110	117	Right-handed alpha
Helix 10	AB1	B	130	134	Right-handed 310
Helix 11	AB2	B	144	148	Right-handed 310
Helix 12	AB3	B	267	280	Right-handed alpha
Helix 13	AB4	C	28	32	Right-handed alpha
Helix 14	AB5	C	33	36	Right-handed 310
Helix 15	AB6	C	110	117	Right-handed alpha
Helix 16	AB7	C	130	134	Right-handed 310
Helix 17	AB8	C	144	148	Right-handed 310
Helix 18	AB9	C	267	280	Right-handed alpha
Helix 19	AC1	D	28	32	Right-handed alpha
Helix 20	AC2	D	33	36	Right-handed 310
Helix 21	AC3	D	110	117	Right-handed alpha
Helix 22	AC4	D	130	134	Right-handed 310
Helix 23	AC5	D	144	148	Right-handed 310
Helix 24	AC6	D	267	280	Right-handed alpha

There are 23 sheets in PDB entry 6D0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	9	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	202	214	anti-parallel
Strand 4	A	234	250	anti-parallel
Strand 5	A	192	196	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	159	164	anti-parallel
Strand 3	A	180	187	anti-parallel
Strand 4	A	234	250	anti-parallel
Strand 5	A	202	214	anti-parallel
Strand 6	A	218	221	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	20	27	anti-parallel
Strand 3	A	38	49	anti-parallel
Strand 4	A	118	128	anti-parallel
Strand 5	A	66	74	anti-parallel
Strand 6	A	94	98	anti-parallel
Strand 7	A	142	143	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	63	first strand
Strand 2	A	103	109	anti-parallel
Strand 3	A	77	81	anti-parallel
Strand 4	A	86	89	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	170	171	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	263	265	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	202	209	anti-parallel
Strand 4	B	243	250	anti-parallel
Strand 5	B	180	187	anti-parallel
Strand 6	B	159	164	anti-parallel
Strand 7	B	150	152	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	20	27	anti-parallel
Strand 3	B	38	49	anti-parallel
Strand 4	B	118	128	anti-parallel
Strand 5	B	66	74	anti-parallel
Strand 6	B	94	98	anti-parallel
Strand 7	B	139	143	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	63	first strand
Strand 2	B	103	109	anti-parallel
Strand 3	B	77	81	anti-parallel
Strand 4	B	86	89	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	170	171	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	234	239	anti-parallel
Strand 3	B	211	214	anti-parallel
Strand 4	B	218	221	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	260	first strand
Strand 2	B	263	265	anti-parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	159	164	anti-parallel
Strand 3	C	180	187	anti-parallel
Strand 4	C	243	250	anti-parallel
Strand 5	C	202	209	anti-parallel
Strand 6	C	224	228	anti-parallel
Strand 7	C	4	10	anti-parallel
Strand 8	D	4	10	anti-parallel
Strand 9	D	224	228	anti-parallel
Strand 10	D	202	214	anti-parallel
Strand 11	D	234	250	anti-parallel
Strand 12	D	192	196	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	159	164	anti-parallel
Strand 3	D	180	187	anti-parallel
Strand 4	D	234	250	anti-parallel
Strand 5	D	202	214	anti-parallel
Strand 6	D	218	221	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	20	27	anti-parallel
Strand 3	C	38	49	anti-parallel
Strand 4	C	118	128	anti-parallel
Strand 5	C	66	74	anti-parallel
Strand 6	C	94	98	anti-parallel
Strand 7	C	142	143	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	63	first strand
Strand 2	C	103	109	anti-parallel
Strand 3	C	77	81	anti-parallel
Strand 4	C	86	89	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	170	171	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	196	first strand
Strand 2	C	234	239	anti-parallel
Strand 3	C	211	214	anti-parallel
Strand 4	C	218	221	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	260	first strand
Strand 2	C	263	265	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	20	27	anti-parallel
Strand 3	D	38	49	anti-parallel
Strand 4	D	118	128	anti-parallel
Strand 5	D	66	74	anti-parallel
Strand 6	D	94	98	anti-parallel
Strand 7	D	142	143	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	63	first strand
Strand 2	D	103	109	anti-parallel
Strand 3	D	77	81	anti-parallel
Strand 4	D	86	89	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	170	171	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	260	first strand
Strand 2	D	263	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D0P