Analysis of interatomic Contacts of Structural Units in PDB entry:
6D0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D0Y entry

There are 4 chains in PDB entry 6D0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLU 26LEU 794
A
 LEU 6LYS 151
B
 SER 1LYS 2
B
 GLU 4LEU 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6D0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
26 37Right-handed alpha
Helix 2
AA2
C
45 60Right-handed alpha
Helix 3
AA3
C
60 79Right-handed alpha
Helix 4
AA4
C
82 97Right-handed alpha
Helix 5
AA5
C
97 118Right-handed alpha
Helix 6
AA6
C
120 137Right-handed alpha
Helix 7
AA7
C
141 154Right-handed alpha
Helix 8
AA8
C
155 158Right-handed 310
Helix 9
AA9
C
162 188Right-handed alpha
Helix 10
AB1
C
189 205Right-handed alpha
Helix 11
AB2
C
210 215Right-handed alpha
Helix 12
AB3
C
227 242Right-handed alpha
Helix 13
AB4
C
251 255Right-handed 310
Helix 14
AB5
C
256 262Right-handed alpha
Helix 15
AB6
C
293 297Right-handed 310
Helix 16
AB7
C
308 326Right-handed alpha
Helix 17
AB8
C
328 338Right-handed alpha
Helix 18
AB9
C
346 360Right-handed alpha
Helix 19
AC1
C
369 383Right-handed alpha
Helix 20
AC2
C
386 401Right-handed alpha
Helix 21
AC3
C
402 405Right-handed 310
Helix 22
AC4
C
406 423Right-handed alpha
Helix 23
AC5
C
429 437Right-handed 310
Helix 24
AC6
C
443 460Right-handed alpha
Helix 25
AC7
C
461 469Right-handed alpha
Helix 26
AC8
C
470 477Right-handed 310
Helix 27
AC9
C
497 510Right-handed alpha
Helix 28
AD1
C
513 521Right-handed alpha
Helix 29
AD2
C
540 555Right-handed alpha
Helix 30
AD3
C
558 569Right-handed alpha
Helix 31
AD4
C
569 577Right-handed alpha
Helix 32
AD5
C
579 595Right-handed alpha
Helix 33
AD6
C
597 611Right-handed alpha
Helix 34
AD7
C
615 624Right-handed alpha
Helix 35
AD8
C
625 632Right-handed 310
Helix 36
AD9
C
634 670Right-handed alpha
Helix 37
AE1
C
687 732Right-handed alpha
Helix 38
AE2
C
737 754Right-handed alpha
Helix 39
AE3
C
754 759Right-handed alpha
Helix 40
AE4
C
761 769Right-handed alpha
Helix 41
AE5
C
775 793Right-handed alpha
Helix 42
AE6
A
28 38Right-handed alpha
Helix 43
AE7
A
52 61Right-handed alpha
Helix 44
AE8
A
62 64Right-handed 310
Helix 45
AE9
A
90 101Right-handed alpha
Helix 46
AF1
A
133 137Right-handed 310
Helix 47
AF2
B
7 19Right-handed alpha
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There are 2 sheets in PDB entry 6D0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 73first strand
Strand 2
A
80 88anti-parallel
Strand 3
A
41 45anti-parallel
Strand 4
A
112 115anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
109 110anti-parallel
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