Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D1O entry

There are 5 chains in PDB entry 6D1O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 12	ARG 295
B	PHE 12	ARG 295
C	GLN 10	ARG 295
D	GLN 10	ARG 295
E	ARG 11	GLU 226

There are 64 helices in PDB entry 6D1O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	53	Right-handed alpha
Helix 2	AA2	A	63	73	Right-handed alpha
Helix 3	AA3	A	143	149	Right-handed alpha
Helix 4	AA4	A	151	159	Right-handed alpha
Helix 5	AA5	A	172	178	Right-handed alpha
Helix 6	AA6	A	191	197	Right-handed alpha
Helix 7	AA7	A	229	245	Right-handed alpha
Helix 8	AA8	A	246	248	Right-handed 310
Helix 9	AA9	B	38	53	Right-handed alpha
Helix 10	AB1	B	63	73	Right-handed alpha
Helix 11	AB2	B	143	149	Right-handed alpha
Helix 12	AB3	B	151	159	Right-handed alpha
Helix 13	AB4	B	172	177	Right-handed alpha
Helix 14	AB5	B	191	197	Right-handed alpha
Helix 15	AB6	B	229	245	Right-handed alpha
Helix 16	AB7	B	246	248	Right-handed 310
Helix 17	AB8	C	38	53	Right-handed alpha
Helix 18	AB9	C	63	73	Right-handed alpha
Helix 19	AC1	C	143	149	Right-handed alpha
Helix 20	AC2	C	151	159	Right-handed alpha
Helix 21	AC3	C	172	178	Right-handed alpha
Helix 22	AC4	C	191	197	Right-handed alpha
Helix 23	AC5	C	229	245	Right-handed alpha
Helix 24	AC6	C	246	248	Right-handed 310
Helix 25	AC7	D	38	53	Right-handed alpha
Helix 26	AC8	D	63	73	Right-handed alpha
Helix 27	AC9	D	143	149	Right-handed alpha
Helix 28	AD1	D	151	159	Right-handed alpha
Helix 29	AD2	D	172	178	Right-handed alpha
Helix 30	AD3	D	192	197	Right-handed alpha
Helix 31	AD4	D	229	245	Right-handed alpha
Helix 32	AD5	D	246	248	Right-handed 310
Helix 33	AD6	E	38	53	Right-handed alpha
Helix 34	AD7	E	63	73	Right-handed alpha
Helix 35	AD8	E	143	149	Right-handed alpha
Helix 36	AD9	E	151	159	Right-handed alpha
Helix 37	AE1	E	172	178	Right-handed alpha
Helix 38	AE2	E	192	197	Right-handed alpha
Helix 39	AE3	E	229	245	Right-handed alpha
Helix 40	AE4	E	246	248	Right-handed 310
Helix 41	AE5	F	38	53	Right-handed alpha
Helix 42	AE6	F	63	73	Right-handed alpha
Helix 43	AE7	F	143	149	Right-handed alpha
Helix 44	AE8	F	151	159	Right-handed alpha
Helix 45	AE9	F	172	178	Right-handed alpha
Helix 46	AF1	F	193	197	Right-handed alpha
Helix 47	AF2	F	229	245	Right-handed alpha
Helix 48	AF3	F	246	248	Right-handed 310
Helix 49	AF4	G	38	53	Right-handed alpha
Helix 50	AF5	G	63	73	Right-handed alpha
Helix 51	AF6	G	143	149	Right-handed alpha
Helix 52	AF7	G	151	159	Right-handed alpha
Helix 53	AF8	G	172	178	Right-handed alpha
Helix 54	AF9	G	192	197	Right-handed alpha
Helix 55	AG1	G	229	245	Right-handed alpha
Helix 56	AG2	G	246	248	Right-handed 310
Helix 57	AG3	H	38	53	Right-handed alpha
Helix 58	AG4	H	63	73	Right-handed alpha
Helix 59	AG5	H	143	149	Right-handed alpha
Helix 60	AG6	H	151	159	Right-handed alpha
Helix 61	AG7	H	172	178	Right-handed alpha
Helix 62	AG8	H	192	197	Right-handed alpha
Helix 63	AG9	H	229	245	Right-handed alpha
Helix 64	AH1	H	246	248	Right-handed 310

There are 32 sheets in PDB entry 6D1O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	26	29	anti-parallel
Strand 3	A	54	57	parallel
Strand 4	A	260	264	anti-parallel
Strand 5	A	123	130	anti-parallel
Strand 6	A	282	288	anti-parallel
Strand 7	A	93	96	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	138	142	anti-parallel
Strand 3	A	268	272	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	202	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	222	225	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	213	215	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	26	29	anti-parallel
Strand 3	B	54	57	parallel
Strand 4	B	260	264	anti-parallel
Strand 5	B	123	130	anti-parallel
Strand 6	B	282	288	anti-parallel
Strand 7	B	93	95	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	138	142	anti-parallel
Strand 3	B	268	272	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	202	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	222	225	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	213	215	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	26	29	anti-parallel
Strand 3	C	54	57	parallel
Strand 4	C	260	264	anti-parallel
Strand 5	C	123	130	anti-parallel
Strand 6	C	282	288	anti-parallel
Strand 7	C	93	96	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	138	142	anti-parallel
Strand 3	C	268	272	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	202	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	222	225	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	213	215	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	26	29	anti-parallel
Strand 3	D	54	57	parallel
Strand 4	D	260	264	anti-parallel
Strand 5	D	123	130	anti-parallel
Strand 6	D	282	288	anti-parallel
Strand 7	D	93	96	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	253	first strand
Strand 2	D	138	142	anti-parallel
Strand 3	D	268	272	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	202	first strand
Strand 2	D	162	166	anti-parallel
Strand 3	D	222	225	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	213	215	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	26	29	anti-parallel
Strand 3	E	54	57	parallel
Strand 4	E	260	264	anti-parallel
Strand 5	E	123	130	anti-parallel
Strand 6	E	282	288	anti-parallel
Strand 7	E	93	95	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	253	first strand
Strand 2	E	138	142	anti-parallel
Strand 3	E	268	272	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	202	first strand
Strand 2	E	162	166	anti-parallel
Strand 3	E	222	225	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	206	first strand
Strand 2	E	213	215	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	19	first strand
Strand 2	F	26	29	anti-parallel
Strand 3	F	54	57	parallel
Strand 4	F	260	264	anti-parallel
Strand 5	F	123	130	anti-parallel
Strand 6	F	282	288	anti-parallel
Strand 7	F	93	95	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	253	first strand
Strand 2	F	138	142	anti-parallel
Strand 3	F	268	272	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	202	first strand
Strand 2	F	162	166	anti-parallel
Strand 3	F	222	225	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	206	first strand
Strand 2	F	213	215	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	19	first strand
Strand 2	G	26	29	anti-parallel
Strand 3	G	54	57	parallel
Strand 4	G	260	264	anti-parallel
Strand 5	G	123	130	anti-parallel
Strand 6	G	281	288	anti-parallel
Strand 7	G	89	97	anti-parallel
Strand 8	G	85	86	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	250	254	first strand
Strand 2	G	137	142	anti-parallel
Strand 3	G	268	272	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	198	202	first strand
Strand 2	G	162	166	anti-parallel
Strand 3	G	222	225	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	206	first strand
Strand 2	G	213	215	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	19	first strand
Strand 2	H	26	29	anti-parallel
Strand 3	H	54	57	parallel
Strand 4	H	260	264	anti-parallel
Strand 5	H	123	130	anti-parallel
Strand 6	H	281	288	anti-parallel
Strand 7	H	89	97	anti-parallel
Strand 8	H	85	86	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	250	254	first strand
Strand 2	H	137	142	anti-parallel
Strand 3	H	268	272	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	198	202	first strand
Strand 2	H	162	166	anti-parallel
Strand 3	H	222	225	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	206	first strand
Strand 2	H	213	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D1O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1O