Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D1P entry

There are 2 chains in PDB entry 6D1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 22	SER 812
B	LEU 22	GLY 813

There are 30 helices in PDB entry 6D1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	50	Right-handed alpha
Helix 2	AA2	A	57	61	Right-handed 310
Helix 3	AA3	A	141	150	Right-handed alpha
Helix 4	AA4	A	151	157	Right-handed alpha
Helix 5	AA5	A	342	356	Right-handed alpha
Helix 6	AA6	A	369	380	Right-handed alpha
Helix 7	AA7	A	396	415	Right-handed alpha
Helix 8	AA8	A	439	458	Right-handed alpha
Helix 9	AA9	A	468	472	Right-handed 310
Helix 10	AB1	A	490	492	Right-handed 310
Helix 11	AB2	A	493	504	Right-handed alpha
Helix 12	AB3	A	541	546	Right-handed alpha
Helix 13	AB4	A	549	565	Right-handed alpha
Helix 14	AB5	A	608	618	Right-handed alpha
Helix 15	AB6	A	672	675	Right-handed 310
Helix 16	AB7	B	44	50	Right-handed alpha
Helix 17	AB8	B	57	61	Right-handed 310
Helix 18	AB9	B	141	150	Right-handed alpha
Helix 19	AC1	B	152	159	Right-handed alpha
Helix 20	AC2	B	342	357	Right-handed alpha
Helix 21	AC3	B	369	380	Right-handed alpha
Helix 22	AC4	B	396	415	Right-handed alpha
Helix 23	AC5	B	439	458	Right-handed alpha
Helix 24	AC6	B	468	472	Right-handed 310
Helix 25	AC7	B	490	492	Right-handed 310
Helix 26	AC8	B	493	504	Right-handed alpha
Helix 27	AC9	B	541	546	Right-handed alpha
Helix 28	AD1	B	549	565	Right-handed alpha
Helix 29	AD2	B	608	618	Right-handed alpha
Helix 30	AD3	B	789	791	Right-handed 310

There are 25 sheets in PDB entry 6D1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	194	199	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	137	140	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	162	169	anti-parallel
Strand 5	A	117	122	anti-parallel
Strand 6	A	125	131	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	213	first strand
Strand 2	A	219	229	anti-parallel
Strand 3	A	263	271	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	259	first strand
Strand 2	A	240	246	anti-parallel
Strand 3	A	284	292	anti-parallel
Strand 4	A	295	303	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	316	318	anti-parallel
Strand 3	A	321	322	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	420	432	parallel
Strand 3	A	462	466	parallel
Strand 4	A	477	479	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	420	432	parallel
Strand 3	A	382	386	parallel
Strand 4	A	360	362	parallel
Strand 5	A	325	329	parallel
Strand 6	A	572	574	parallel
Strand 7	A	510	511	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	582	first strand
Strand 2	A	594	595	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	641	647	anti-parallel
Strand 3	A	677	680	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	634	first strand
Strand 2	A	698	709	parallel
Strand 3	A	685	695	anti-parallel
Strand 4	A	651	656	anti-parallel
Strand 5	A	659	665	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	723	first strand
Strand 2	A	730	738	anti-parallel
Strand 3	A	781	787	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	774	776	first strand
Strand 2	A	751	756	anti-parallel
Strand 3	A	793	799	anti-parallel
Strand 4	A	807	811	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	194	199	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	137	140	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	162	169	anti-parallel
Strand 5	B	117	122	anti-parallel
Strand 6	B	125	131	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	209	first strand
Strand 2	B	219	229	anti-parallel
Strand 3	B	212	213	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	209	first strand
Strand 2	B	219	229	anti-parallel
Strand 3	B	265	271	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	257	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	284	292	anti-parallel
Strand 4	B	295	303	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	310	first strand
Strand 2	B	316	318	anti-parallel
Strand 3	B	321	322	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	420	432	parallel
Strand 3	B	462	466	parallel
Strand 4	B	477	479	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	420	432	parallel
Strand 3	B	382	386	parallel
Strand 4	B	360	362	parallel
Strand 5	B	325	329	parallel
Strand 6	B	572	574	parallel
Strand 7	B	510	511	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	582	first strand
Strand 2	B	594	595	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	625	first strand
Strand 2	B	640	647	anti-parallel
Strand 3	B	677	681	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	634	first strand
Strand 2	B	698	709	parallel
Strand 3	B	685	695	anti-parallel
Strand 4	B	651	656	anti-parallel
Strand 5	B	659	665	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	723	first strand
Strand 2	B	730	738	anti-parallel
Strand 3	B	781	787	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	774	776	first strand
Strand 2	B	751	756	anti-parallel
Strand 3	B	793	799	anti-parallel
Strand 4	B	807	811	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1P