Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D1S entry

There are 4 chains in PDB entry 6D1S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	LEU 416
B	ARG 10	LEU 416
C	ARG 10	LEU 416
D	ARG 10	LYS 312

There are 70 helices in PDB entry 6D1S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	69	Right-handed alpha
Helix 2	AA2	A	223	244	Right-handed alpha
Helix 3	AA3	A	245	247	Right-handed 310
Helix 4	AA4	A	251	275	Right-handed alpha
Helix 5	AA5	A	284	310	Right-handed alpha
Helix 6	AA6	A	390	414	Right-handed alpha
Helix 7	AA7	B	60	69	Right-handed alpha
Helix 8	AA8	B	151	155	Right-handed 310
Helix 9	AA9	B	176	179	Right-handed 310
Helix 10	AB1	B	223	244	Right-handed alpha
Helix 11	AB2	B	245	247	Right-handed 310
Helix 12	AB3	B	251	275	Right-handed alpha
Helix 13	AB4	B	284	310	Right-handed alpha
Helix 14	AB5	B	390	414	Right-handed alpha
Helix 15	AB6	C	60	69	Right-handed alpha
Helix 16	AB7	C	223	244	Right-handed alpha
Helix 17	AB8	C	245	247	Right-handed 310
Helix 18	AB9	C	251	274	Right-handed alpha
Helix 19	AC1	C	275	277	Right-handed 310
Helix 20	AC2	C	284	310	Right-handed alpha
Helix 21	AC3	C	390	414	Right-handed alpha
Helix 22	AC4	D	60	69	Right-handed alpha
Helix 23	AC5	D	176	179	Right-handed 310
Helix 24	AC6	D	223	244	Right-handed alpha
Helix 25	AC7	D	245	247	Right-handed 310
Helix 26	AC8	D	251	275	Right-handed alpha
Helix 27	AC9	D	284	310	Right-handed alpha
Helix 28	AD1	D	390	414	Right-handed alpha
Helix 29	AD2	E	60	69	Right-handed alpha
Helix 30	AD3	E	176	179	Right-handed 310
Helix 31	AD4	E	223	244	Right-handed alpha
Helix 32	AD5	E	245	247	Right-handed 310
Helix 33	AD6	E	251	275	Right-handed alpha
Helix 34	AD7	E	284	310	Right-handed alpha
Helix 35	AD8	E	390	414	Right-handed alpha
Helix 36	AD9	F	60	69	Right-handed alpha
Helix 37	AE1	F	151	155	Right-handed 310
Helix 38	AE2	F	176	179	Right-handed 310
Helix 39	AE3	F	223	244	Right-handed alpha
Helix 40	AE4	F	245	247	Right-handed 310
Helix 41	AE5	F	251	275	Right-handed alpha
Helix 42	AE6	F	284	312	Right-handed alpha
Helix 43	AE7	F	390	414	Right-handed alpha
Helix 44	AE8	G	60	69	Right-handed alpha
Helix 45	AE9	G	223	244	Right-handed alpha
Helix 46	AF1	G	245	247	Right-handed 310
Helix 47	AF2	G	251	274	Right-handed alpha
Helix 48	AF3	G	275	277	Right-handed 310
Helix 49	AF4	G	284	310	Right-handed alpha
Helix 50	AF5	G	390	414	Right-handed alpha
Helix 51	AF6	H	60	69	Right-handed alpha
Helix 52	AF7	H	223	244	Right-handed alpha
Helix 53	AF8	H	245	247	Right-handed 310
Helix 54	AF9	H	251	274	Right-handed alpha
Helix 55	AG1	H	275	277	Right-handed 310
Helix 56	AG2	H	284	309	Right-handed alpha
Helix 57	AG3	H	390	414	Right-handed alpha
Helix 58	AG4	I	60	69	Right-handed alpha
Helix 59	AG5	I	223	244	Right-handed alpha
Helix 60	AG6	I	245	247	Right-handed 310
Helix 61	AG7	I	251	275	Right-handed alpha
Helix 62	AG8	I	284	310	Right-handed alpha
Helix 63	AG9	I	390	414	Right-handed alpha
Helix 64	AH1	J	60	69	Right-handed alpha
Helix 65	AH2	J	176	179	Right-handed 310
Helix 66	AH3	J	223	244	Right-handed alpha
Helix 67	AH4	J	245	247	Right-handed 310
Helix 68	AH5	J	251	275	Right-handed alpha
Helix 69	AH6	J	284	310	Right-handed alpha
Helix 70	AH7	J	390	414	Right-handed alpha

There are 28 sheets in PDB entry 6D1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	140	148	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	167	174	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	140	148	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	160	162	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	167	174	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	140	148	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	167	174	anti-parallel
Strand 5	H	167	174	parallel
Strand 6	H	187	199	anti-parallel
Strand 7	H	123	132	anti-parallel
Strand 8	H	76	78	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	187	199	anti-parallel
Strand 3	C	167	174	anti-parallel
Strand 4	H	167	174	parallel
Strand 5	H	187	199	anti-parallel
Strand 6	H	160	162	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	140	148	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	160	162	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	167	174	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	12	27	anti-parallel
Strand 6	E	140	148	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	167	174	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	111	anti-parallel
Strand 4	F	32	44	anti-parallel
Strand 5	F	12	27	anti-parallel
Strand 6	F	140	148	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	160	162	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	167	174	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	58	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	99	111	anti-parallel
Strand 4	G	32	44	anti-parallel
Strand 5	G	12	27	anti-parallel
Strand 6	G	140	148	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	160	162	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	167	174	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	58	first strand
Strand 2	H	86	94	anti-parallel
Strand 3	H	99	111	anti-parallel
Strand 4	H	32	44	anti-parallel
Strand 5	H	12	27	anti-parallel
Strand 6	H	140	148	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	99	111	anti-parallel
Strand 4	I	32	44	anti-parallel
Strand 5	I	12	27	anti-parallel
Strand 6	I	140	148	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	160	162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	167	174	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	58	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	99	111	anti-parallel
Strand 4	J	32	44	anti-parallel
Strand 5	J	12	27	anti-parallel
Strand 6	J	140	148	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	160	162	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	167	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D1S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1S