Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D1W entry

There are 4 chains in PDB entry 6D1W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 216	ASP 682
B	TYR 216	ASP 682
C	TYR 216	ASP 682
D	TYR 216	ASP 682

There are 72 helices in PDB entry 6D1W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	216	242	Right-handed alpha
Helix 2	AA2	A	245	258	Right-handed alpha
Helix 3	AA3	A	269	273	Right-handed 310
Helix 4	AA4	A	275	285	Right-handed alpha
Helix 5	AA5	A	285	291	Right-handed alpha
Helix 6	AA6	A	327	331	Right-handed 310
Helix 7	AA7	A	398	412	Right-handed alpha
Helix 8	AA8	A	467	491	Right-handed alpha
Helix 9	AA9	A	505	528	Right-handed alpha
Helix 10	AB1	A	529	531	Right-handed 310
Helix 11	AB2	A	532	541	Right-handed alpha
Helix 12	AB3	A	548	572	Right-handed alpha
Helix 13	AB4	A	573	581	Right-handed alpha
Helix 14	AB5	A	583	619	Right-handed alpha
Helix 15	AB6	A	623	627	Right-handed 310
Helix 16	AB7	A	628	642	Right-handed alpha
Helix 17	AB8	A	645	653	Right-handed alpha
Helix 18	AB9	A	655	681	Right-handed alpha
Helix 19	AC1	B	217	242	Right-handed alpha
Helix 20	AC2	B	245	258	Right-handed alpha
Helix 21	AC3	B	269	273	Right-handed 310
Helix 22	AC4	B	275	285	Right-handed alpha
Helix 23	AC5	B	285	291	Right-handed alpha
Helix 24	AC6	B	327	331	Right-handed 310
Helix 25	AC7	B	398	412	Right-handed alpha
Helix 26	AC8	B	467	491	Right-handed alpha
Helix 27	AC9	B	505	528	Right-handed alpha
Helix 28	AD1	B	529	531	Right-handed 310
Helix 29	AD2	B	532	541	Right-handed alpha
Helix 30	AD3	B	548	572	Right-handed alpha
Helix 31	AD4	B	573	581	Right-handed alpha
Helix 32	AD5	B	583	619	Right-handed alpha
Helix 33	AD6	B	623	627	Right-handed 310
Helix 34	AD7	B	628	642	Right-handed alpha
Helix 35	AD8	B	645	653	Right-handed alpha
Helix 36	AD9	B	655	681	Right-handed alpha
Helix 37	AE1	C	217	242	Right-handed alpha
Helix 38	AE2	C	245	258	Right-handed alpha
Helix 39	AE3	C	269	273	Right-handed 310
Helix 40	AE4	C	275	285	Right-handed alpha
Helix 41	AE5	C	285	291	Right-handed alpha
Helix 42	AE6	C	327	331	Right-handed 310
Helix 43	AE7	C	398	412	Right-handed alpha
Helix 44	AE8	C	467	491	Right-handed alpha
Helix 45	AE9	C	505	528	Right-handed alpha
Helix 46	AF1	C	529	531	Right-handed 310
Helix 47	AF2	C	532	541	Right-handed alpha
Helix 48	AF3	C	548	572	Right-handed alpha
Helix 49	AF4	C	573	581	Right-handed alpha
Helix 50	AF5	C	583	619	Right-handed alpha
Helix 51	AF6	C	623	627	Right-handed 310
Helix 52	AF7	C	628	642	Right-handed alpha
Helix 53	AF8	C	645	653	Right-handed alpha
Helix 54	AF9	C	655	681	Right-handed alpha
Helix 55	AG1	D	217	242	Right-handed alpha
Helix 56	AG2	D	245	258	Right-handed alpha
Helix 57	AG3	D	269	273	Right-handed 310
Helix 58	AG4	D	275	285	Right-handed alpha
Helix 59	AG5	D	285	291	Right-handed alpha
Helix 60	AG6	D	327	331	Right-handed 310
Helix 61	AG7	D	398	412	Right-handed alpha
Helix 62	AG8	D	467	491	Right-handed alpha
Helix 63	AG9	D	505	528	Right-handed alpha
Helix 64	AH1	D	529	531	Right-handed 310
Helix 65	AH2	D	532	541	Right-handed alpha
Helix 66	AH3	D	548	572	Right-handed alpha
Helix 67	AH4	D	573	581	Right-handed alpha
Helix 68	AH5	D	583	619	Right-handed alpha
Helix 69	AH6	D	623	627	Right-handed 310
Helix 70	AH7	D	628	642	Right-handed alpha
Helix 71	AH8	D	645	653	Right-handed alpha
Helix 72	AH9	D	655	681	Right-handed alpha

There are 12 sheets in PDB entry 6D1W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	313	323	anti-parallel
Strand 3	A	391	394	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	313	323	anti-parallel
Strand 3	A	421	430	anti-parallel
Strand 4	A	435	444	anti-parallel
Strand 5	A	452	460	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	385	386	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	313	323	anti-parallel
Strand 3	B	391	394	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	313	323	anti-parallel
Strand 3	B	421	430	anti-parallel
Strand 4	B	435	444	anti-parallel
Strand 5	B	452	460	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	385	386	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	313	323	anti-parallel
Strand 3	C	391	394	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	313	323	anti-parallel
Strand 3	C	421	430	anti-parallel
Strand 4	C	435	444	anti-parallel
Strand 5	C	452	460	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	385	386	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	313	323	anti-parallel
Strand 3	D	391	394	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	313	323	anti-parallel
Strand 3	D	421	430	anti-parallel
Strand 4	D	435	444	anti-parallel
Strand 5	D	452	460	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	380	first strand
Strand 2	D	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D1W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1W