Analysis of interatomic Contacts of Structural Units in PDB entry:
6D23

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D23 entry

There are 3 chains in PDB entry 6D23 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 59	THR 545
B	ILE 56	THR 545
C	VAL 52	GLN 340

There are 98 helices in PDB entry 6D23. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	67	Right-handed alpha
Helix 2	AA2	A	78	84	Right-handed alpha
Helix 3	AA3	A	84	95	Right-handed alpha
Helix 4	AA4	A	114	122	Right-handed alpha
Helix 5	AA5	A	123	127	Right-handed 310
Helix 6	AA6	A	136	142	Right-handed alpha
Helix 7	AA7	A	153	169	Right-handed alpha
Helix 8	AA8	A	190	202	Right-handed alpha
Helix 9	AA9	A	222	234	Right-handed alpha
Helix 10	AB1	A	238	240	Right-handed 310
Helix 11	AB2	A	246	250	Right-handed 310
Helix 12	AB3	A	251	256	Right-handed alpha
Helix 13	AB4	A	256	263	Right-handed alpha
Helix 14	AB5	A	264	271	Right-handed alpha
Helix 15	AB6	A	292	297	Right-handed alpha
Helix 16	AB7	A	299	305	Right-handed alpha
Helix 17	AB8	A	308	319	Right-handed alpha
Helix 18	AB9	A	326	339	Right-handed alpha
Helix 19	AC1	A	364	368	Right-handed 310
Helix 20	AC2	A	423	427	Right-handed 310
Helix 21	AC3	A	466	470	Right-handed alpha
Helix 22	AC4	A	476	487	Right-handed alpha
Helix 23	AC5	A	495	515	Right-handed alpha
Helix 24	AC6	A	530	541	Right-handed alpha
Helix 25	AC7	B	61	67	Right-handed alpha
Helix 26	AC8	B	78	84	Right-handed alpha
Helix 27	AC9	B	84	95	Right-handed alpha
Helix 28	AD1	B	114	122	Right-handed alpha
Helix 29	AD2	B	123	127	Right-handed 310
Helix 30	AD3	B	133	135	Right-handed 310
Helix 31	AD4	B	136	142	Right-handed alpha
Helix 32	AD5	B	153	170	Right-handed alpha
Helix 33	AD6	B	190	202	Right-handed alpha
Helix 34	AD7	B	222	234	Right-handed alpha
Helix 35	AD8	B	238	240	Right-handed 310
Helix 36	AD9	B	246	250	Right-handed 310
Helix 37	AE1	B	251	256	Right-handed alpha
Helix 38	AE2	B	256	263	Right-handed alpha
Helix 39	AE3	B	264	271	Right-handed alpha
Helix 40	AE4	B	293	298	Right-handed alpha
Helix 41	AE5	B	299	305	Right-handed alpha
Helix 42	AE6	B	308	319	Right-handed alpha
Helix 43	AE7	B	326	339	Right-handed alpha
Helix 44	AE8	B	364	368	Right-handed 310
Helix 45	AE9	B	423	427	Right-handed 310
Helix 46	AF1	B	466	470	Right-handed alpha
Helix 47	AF2	B	476	487	Right-handed alpha
Helix 48	AF3	B	495	515	Right-handed alpha
Helix 49	AF4	B	530	541	Right-handed alpha
Helix 50	AF5	C	61	66	Right-handed alpha
Helix 51	AF6	C	78	84	Right-handed alpha
Helix 52	AF7	C	84	95	Right-handed alpha
Helix 53	AF8	C	114	122	Right-handed alpha
Helix 54	AF9	C	123	127	Right-handed 310
Helix 55	AG1	C	129	134	Right-handed alpha
Helix 56	AG2	C	136	142	Right-handed alpha
Helix 57	AG3	C	153	170	Right-handed alpha
Helix 58	AG4	C	190	202	Right-handed alpha
Helix 59	AG5	C	222	234	Right-handed alpha
Helix 60	AG6	C	238	240	Right-handed 310
Helix 61	AG7	C	246	250	Right-handed 310
Helix 62	AG8	C	251	256	Right-handed alpha
Helix 63	AG9	C	256	263	Right-handed alpha
Helix 64	AH1	C	264	271	Right-handed alpha
Helix 65	AH2	C	293	298	Right-handed alpha
Helix 66	AH3	C	299	305	Right-handed alpha
Helix 67	AH4	C	308	319	Right-handed alpha
Helix 68	AH5	C	326	339	Right-handed alpha
Helix 69	AH6	C	364	368	Right-handed 310
Helix 70	AH7	C	423	427	Right-handed 310
Helix 71	AH8	C	476	487	Right-handed alpha
Helix 72	AH9	C	495	515	Right-handed alpha
Helix 73	AI1	C	530	541	Right-handed alpha
Helix 74	AI2	D	61	65	Right-handed 310
Helix 75	AI3	D	78	84	Right-handed alpha
Helix 76	AI4	D	84	95	Right-handed alpha
Helix 77	AI5	D	114	122	Right-handed alpha
Helix 78	AI6	D	123	127	Right-handed 310
Helix 79	AI7	D	129	134	Right-handed alpha
Helix 80	AI8	D	136	142	Right-handed alpha
Helix 81	AI9	D	153	169	Right-handed alpha
Helix 82	AJ1	D	190	202	Right-handed alpha
Helix 83	AJ2	D	222	234	Right-handed alpha
Helix 84	AJ3	D	238	240	Right-handed 310
Helix 85	AJ4	D	246	250	Right-handed 310
Helix 86	AJ5	D	251	256	Right-handed alpha
Helix 87	AJ6	D	256	263	Right-handed alpha
Helix 88	AJ7	D	264	271	Right-handed alpha
Helix 89	AJ8	D	293	298	Right-handed alpha
Helix 90	AJ9	D	299	305	Right-handed alpha
Helix 91	AK1	D	308	319	Right-handed alpha
Helix 92	AK2	D	326	339	Right-handed alpha
Helix 93	AK3	D	364	368	Right-handed 310
Helix 94	AK4	D	423	427	Right-handed 310
Helix 95	AK5	D	466	470	Right-handed alpha
Helix 96	AK6	D	476	487	Right-handed alpha
Helix 97	AK7	D	495	515	Right-handed alpha
Helix 98	AK8	D	530	541	Right-handed alpha

There are 8 sheets in PDB entry 6D23. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	103	108	parallel
Strand 3	A	68	74	parallel
Strand 4	A	178	184	parallel
Strand 5	A	211	215	parallel
Strand 6	A	242	244	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	465	first strand
Strand 2	A	441	449	anti-parallel
Strand 3	A	431	437	anti-parallel
Strand 4	A	409	416	anti-parallel
Strand 5	A	276	284	anti-parallel
Strand 6	A	396	402	parallel
Strand 7	A	380	386	anti-parallel
Strand 8	A	349	355	anti-parallel
Strand 9	A	520	524	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	103	108	parallel
Strand 3	B	69	74	parallel
Strand 4	B	179	184	parallel
Strand 5	B	211	215	parallel
Strand 6	B	242	244	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	465	first strand
Strand 2	B	441	449	anti-parallel
Strand 3	B	431	437	anti-parallel
Strand 4	B	409	416	anti-parallel
Strand 5	B	276	284	anti-parallel
Strand 6	B	397	402	parallel
Strand 7	B	380	385	anti-parallel
Strand 8	B	349	355	anti-parallel
Strand 9	B	520	524	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	103	108	parallel
Strand 3	C	68	74	parallel
Strand 4	C	178	184	parallel
Strand 5	C	211	215	parallel
Strand 6	C	242	244	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	465	first strand
Strand 2	C	441	449	anti-parallel
Strand 3	C	431	437	anti-parallel
Strand 4	C	409	416	anti-parallel
Strand 5	C	276	284	anti-parallel
Strand 6	C	397	402	parallel
Strand 7	C	380	385	anti-parallel
Strand 8	C	349	355	anti-parallel
Strand 9	C	520	524	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	148	first strand
Strand 2	D	103	108	parallel
Strand 3	D	68	74	parallel
Strand 4	D	178	184	parallel
Strand 5	D	211	215	parallel
Strand 6	D	242	244	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	465	first strand
Strand 2	D	441	449	anti-parallel
Strand 3	D	431	437	anti-parallel
Strand 4	D	409	416	anti-parallel
Strand 5	D	276	284	anti-parallel
Strand 6	D	397	402	parallel
Strand 7	D	380	385	anti-parallel
Strand 8	D	349	355	anti-parallel
Strand 9	D	520	524	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D23

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D23