Analysis of interatomic Contacts of Structural Units in PDB entry:
6D24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D24 entry

There are 3 chains in PDB entry 6D24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 52SER 553
B
 VAL 52SER 553
C
 VAL 52GLU 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 6D24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 84Right-handed alpha
Helix 2
AA2
A
84 95Right-handed alpha
Helix 3
AA3
A
114 122Right-handed alpha
Helix 4
AA4
A
123 127Right-handed 310
Helix 5
AA5
A
133 135Right-handed 310
Helix 6
AA6
A
136 142Right-handed alpha
Helix 7
AA7
A
153 169Right-handed alpha
Helix 8
AA8
A
190 202Right-handed alpha
Helix 9
AA9
A
222 234Right-handed alpha
Helix 10
AB1
A
238 240Right-handed 310
Helix 11
AB2
A
247 250Right-handed 310
Helix 12
AB3
A
251 263Right-handed alpha
Helix 13
AB4
A
264 269Right-handed alpha
Helix 14
AB5
A
292 297Right-handed alpha
Helix 15
AB6
A
299 305Right-handed alpha
Helix 16
AB7
A
308 319Right-handed alpha
Helix 17
AB8
A
326 339Right-handed alpha
Helix 18
AB9
A
423 427Right-handed 310
Helix 19
AC1
A
466 470Right-handed alpha
Helix 20
AC2
A
476 488Right-handed alpha
Helix 21
AC3
A
489 491Right-handed 310
Helix 22
AC4
A
495 515Right-handed alpha
Helix 23
AC5
A
530 541Right-handed alpha
Helix 24
AC6
B
61 67Right-handed alpha
Helix 25
AC7
B
78 84Right-handed alpha
Helix 26
AC8
B
84 95Right-handed alpha
Helix 27
AC9
B
114 122Right-handed alpha
Helix 28
AD1
B
123 127Right-handed 310
Helix 29
AD2
B
133 135Right-handed 310
Helix 30
AD3
B
136 142Right-handed alpha
Helix 31
AD4
B
153 169Right-handed alpha
Helix 32
AD5
B
190 202Right-handed alpha
Helix 33
AD6
B
222 234Right-handed alpha
Helix 34
AD7
B
238 240Right-handed 310
Helix 35
AD8
B
247 250Right-handed 310
Helix 36
AD9
B
251 263Right-handed alpha
Helix 37
AE1
B
264 269Right-handed alpha
Helix 38
AE2
B
292 298Right-handed alpha
Helix 39
AE3
B
299 305Right-handed alpha
Helix 40
AE4
B
308 319Right-handed alpha
Helix 41
AE5
B
326 339Right-handed alpha
Helix 42
AE6
B
423 427Right-handed 310
Helix 43
AE7
B
466 470Right-handed alpha
Helix 44
AE8
B
476 488Right-handed alpha
Helix 45
AE9
B
489 493Right-handed 310
Helix 46
AF1
B
495 515Right-handed alpha
Helix 47
AF2
B
530 541Right-handed alpha
Helix 48
AF3
C
61 67Right-handed alpha
Helix 49
AF4
C
78 84Right-handed alpha
Helix 50
AF5
C
84 95Right-handed alpha
Helix 51
AF6
C
114 122Right-handed alpha
Helix 52
AF7
C
123 127Right-handed 310
Helix 53
AF8
C
133 135Right-handed 310
Helix 54
AF9
C
136 142Right-handed alpha
Helix 55
AG1
C
153 170Right-handed alpha
Helix 56
AG2
C
190 201Right-handed alpha
Helix 57
AG3
C
222 234Right-handed alpha
Helix 58
AG4
C
238 240Right-handed 310
Helix 59
AG5
C
246 250Right-handed 310
Helix 60
AG6
C
251 263Right-handed alpha
Helix 61
AG7
C
264 269Right-handed alpha
Helix 62
AG8
C
293 298Right-handed alpha
Helix 63
AG9
C
299 305Right-handed alpha
Helix 64
AH1
C
308 319Right-handed alpha
Helix 65
AH2
C
326 339Right-handed alpha
Helix 66
AH3
C
423 427Right-handed 310
Helix 67
AH4
C
465 470Right-handed alpha
Helix 68
AH5
C
476 488Right-handed alpha
Helix 69
AH6
C
489 493Right-handed 310
Helix 70
AH7
C
495 515Right-handed alpha
Helix 71
AH8
C
530 541Right-handed alpha
Helix 72
AH9
D
61 66Right-handed alpha
Helix 73
AI1
D
78 84Right-handed alpha
Helix 74
AI2
D
84 95Right-handed alpha
Helix 75
AI3
D
114 122Right-handed alpha
Helix 76
AI4
D
123 127Right-handed 310
Helix 77
AI5
D
133 135Right-handed 310
Helix 78
AI6
D
136 142Right-handed alpha
Helix 79
AI7
D
153 170Right-handed alpha
Helix 80
AI8
D
190 202Right-handed alpha
Helix 81
AI9
D
222 234Right-handed alpha
Helix 82
AJ1
D
238 240Right-handed 310
Helix 83
AJ2
D
247 250Right-handed 310
Helix 84
AJ3
D
251 263Right-handed alpha
Helix 85
AJ4
D
264 269Right-handed alpha
Helix 86
AJ5
D
293 298Right-handed alpha
Helix 87
AJ6
D
299 305Right-handed alpha
Helix 88
AJ7
D
308 319Right-handed alpha
Helix 89
AJ8
D
326 339Right-handed alpha
Helix 90
AJ9
D
423 427Right-handed 310
Helix 91
AK1
D
465 470Right-handed alpha
Helix 92
AK2
D
476 488Right-handed alpha
Helix 93
AK3
D
489 491Right-handed 310
Helix 94
AK4
D
495 515Right-handed alpha
Helix 95
AK5
D
530 541Right-handed alpha
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There are 8 sheets in PDB entry 6D24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
103 108parallel
Strand 3
A
69 74parallel
Strand 4
A
179 184parallel
Strand 5
A
211 215parallel
Strand 6
A
242 245parallel
Strand 7
A
493 494anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 465first strand
Strand 2
A
441 449anti-parallel
Strand 3
A
431 437anti-parallel
Strand 4
A
409 416anti-parallel
Strand 5
A
276 284anti-parallel
Strand 6
A
396 402parallel
Strand 7
A
380 386anti-parallel
Strand 8
A
349 355anti-parallel
Strand 9
A
520 524parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
103 108parallel
Strand 3
B
69 74parallel
Strand 4
B
179 184parallel
Strand 5
B
211 215parallel
Strand 6
B
242 244parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 465first strand
Strand 2
B
441 449anti-parallel
Strand 3
B
431 437anti-parallel
Strand 4
B
409 416anti-parallel
Strand 5
B
276 284anti-parallel
Strand 6
B
396 402parallel
Strand 7
B
380 386anti-parallel
Strand 8
B
349 355anti-parallel
Strand 9
B
520 524parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 148first strand
Strand 2
C
103 108parallel
Strand 3
C
68 74parallel
Strand 4
C
178 184parallel
Strand 5
C
211 215parallel
Strand 6
C
242 244parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
457 462first strand
Strand 2
C
441 449anti-parallel
Strand 3
C
431 437anti-parallel
Strand 4
C
409 416anti-parallel
Strand 5
C
276 284anti-parallel
Strand 6
C
396 402parallel
Strand 7
C
380 386anti-parallel
Strand 8
C
349 355anti-parallel
Strand 9
C
520 524parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 148first strand
Strand 2
D
103 108parallel
Strand 3
D
68 74parallel
Strand 4
D
178 184parallel
Strand 5
D
211 215parallel
Strand 6
D
242 245parallel
Strand 7
D
493 494anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
457 462first strand
Strand 2
D
441 449anti-parallel
Strand 3
D
431 437anti-parallel
Strand 4
D
409 416anti-parallel
Strand 5
D
276 284anti-parallel
Strand 6
D
396 402parallel
Strand 7
D
380 386anti-parallel
Strand 8
D
349 355anti-parallel
Strand 9
D
520 524parallel
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