Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D2C entry

There are 2 chains in PDB entry 6D2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 44ASN 303
B
 GLN 44ASN 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6D2C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
150 154Right-handed 310
Helix 3
AA3
A
211 215Right-handed alpha
Helix 4
AA4
A
267 271Right-handed 310
Helix 5
AA5
B
150 154Right-handed 310
Helix 6
AA6
B
211 215Right-handed alpha
Helix 7
AA7
B
267 271Right-handed 310
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There are 5 sheets in PDB entry 6D2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
117 121anti-parallel
Strand 3
A
275 281anti-parallel
Strand 4
A
156 162anti-parallel
Strand 5
A
175 187anti-parallel
Strand 6
A
193 205anti-parallel
Strand 7
A
216 225anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
94 102anti-parallel
Strand 3
A
287 300anti-parallel
Strand 4
A
133 144anti-parallel
Strand 5
A
230 240anti-parallel
Strand 6
A
248 256anti-parallel
Strand 7
A
259 261anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
117 121anti-parallel
Strand 3
B
275 281anti-parallel
Strand 4
B
156 162anti-parallel
Strand 5
B
175 187anti-parallel
Strand 6
B
193 205anti-parallel
Strand 7
B
216 225anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
94 102anti-parallel
Strand 3
B
287 300anti-parallel
Strand 4
B
133 144anti-parallel
Strand 5
B
230 241anti-parallel
Strand 6
B
244 256anti-parallel
Strand 7
B
259 261anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
94 102anti-parallel
Strand 3
B
287 300anti-parallel
Strand 4
B
133 144anti-parallel
Strand 5
B
230 241anti-parallel
Strand 6
B
244 256anti-parallel
Strand 7
B
264 265anti-parallel
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