Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D2I entry

There are 2 chains in PDB entry 6D2I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 536LEU 808
B
 PHE 537LEU 808
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6D2I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
541 543Right-handed 310
Helix 2
AA2
A
569 571Right-handed 310
Helix 3
AA3
A
585 589Right-handed 310
Helix 4
AA4
A
590 602Right-handed alpha
Helix 5
AA5
A
633 641Right-handed alpha
Helix 6
AA6
A
642 645Right-handed 310
Helix 7
AA7
A
646 667Right-handed alpha
Helix 8
AA8
A
703 707Right-handed 310
Helix 9
AA9
A
708 715Right-handed alpha
Helix 10
AB1
A
720 726Right-handed alpha
Helix 11
AB2
A
731 749Right-handed alpha
Helix 12
AB3
A
758 768Right-handed alpha
Helix 13
AB4
A
780 788Right-handed alpha
Helix 14
AB5
A
791 795Right-handed 310
Helix 15
AB6
A
797 807Right-handed alpha
Helix 16
AB7
B
541 543Right-handed 310
Helix 17
AB8
B
587 589Right-handed 310
Helix 18
AB9
B
590 603Right-handed alpha
Helix 19
AC1
B
633 641Right-handed alpha
Helix 20
AC2
B
642 645Right-handed 310
Helix 21
AC3
B
646 667Right-handed alpha
Helix 22
AC4
B
703 707Right-handed 310
Helix 23
AC5
B
708 715Right-handed alpha
Helix 24
AC6
B
720 726Right-handed alpha
Helix 25
AC7
B
731 749Right-handed alpha
Helix 26
AC8
B
758 768Right-handed alpha
Helix 27
AC9
B
780 788Right-handed alpha
Helix 28
AD1
B
791 795Right-handed 310
Helix 29
AD2
B
797 807Right-handed alpha
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There are 4 sheets in PDB entry 6D2I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 553first strand
Strand 2
A
557 567anti-parallel
Strand 3
A
573 583anti-parallel
Strand 4
A
623 627anti-parallel
Strand 5
A
612 616anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 683first strand
Strand 2
A
694 697anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 540first strand
Strand 2
B
612 616parallel
Strand 3
B
623 627anti-parallel
Strand 4
B
573 583anti-parallel
Strand 5
B
557 567anti-parallel
Strand 6
B
545 553anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
679 683first strand
Strand 2
B
694 697anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il