Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D2K entry

There is 1 chain in PDB entry 6D2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 37LEU 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6D2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 78Right-handed alpha
Helix 2
AA2
A
81 83Right-handed 310
Helix 3
AA3
A
104 110Right-handed alpha
Helix 4
AA4
A
127 131Right-handed 310
Helix 5
AA5
A
133 150Right-handed alpha
Helix 6
AA6
A
156 173Right-handed alpha
Helix 7
AA7
A
176 187Right-handed alpha
Helix 8
AA8
A
192 195Right-handed 310
Helix 9
AA9
A
196 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
211 224Right-handed alpha
Helix 12
AB3
A
268 270Right-handed 310
Helix 13
AB4
A
302 321Right-handed alpha
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There are 2 sheets in PDB entry 6D2K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
115 121parallel
Strand 4
A
85 90anti-parallel
Strand 5
A
96 98anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 266first strand
Strand 2
A
252 257anti-parallel
Strand 3
A
243 249anti-parallel
Strand 4
A
234 237anti-parallel
Strand 5
A
295 300anti-parallel
Strand 6
A
279 283anti-parallel
Strand 7
A
272 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il